| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG6608304.1 DNA-directed RNA polymerases IV and V subunit 2, partial [Cucurbita argyrosperma subsp. sororia] | 3.0e-49 | 84.62 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
MLPRHARLQNMT SSRMK NI+VEVYT+RLV SD KTG+DQYVD+DL++QDNRD+FIGRLPVMVNSDLCWMKD+QKRD EFDHGGYFLIKGAEKIFI Q
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
Query: EQICLRRLLVSNIQGWT
EQICLRRL +SN QGWT
Subjt: EQICLRRLLVSNIQGWT
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| XP_022138042.1 DNA-directed RNA polymerases IV and V subunit 2-like [Momordica charantia] | 6.0e-50 | 85.47 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
MLPRHARLQNMT SSRMK NI+VEVYT+RLV SD KTGKDQYVD+DL++QDNR++FIGRLPVMVNSDLCWMK+EQKRD EFDHGGYFLIKGAEKIFI Q
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
Query: EQICLRRLLVSNIQGWT
EQICLRRL +SNIQGWT
Subjt: EQICLRRLLVSNIQGWT
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| XP_022940261.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita moschata] | 3.0e-49 | 84.62 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
MLPRHARLQNMT SSRMK NI+VEVYT+RLV SD KTG+DQYVD+DL++QDNRD+FIGRLPVMVNSDLCWMKD+QKRD EFDHGGYFLIKGAEKIFI Q
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
Query: EQICLRRLLVSNIQGWT
EQICLRRL +SN QGWT
Subjt: EQICLRRLLVSNIQGWT
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| XP_022981836.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita maxima] | 6.6e-49 | 83.76 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
+LPRHARLQNMT SSRMK NI+VEVYT+RLV SD KTG+DQYVD+DL++QDNRD+FIGRLPVMVNSDLCWMKD+QKRD EFDHGGYFLIKGAEKIFI Q
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
Query: EQICLRRLLVSNIQGWT
EQICLRRL +SN QGWT
Subjt: EQICLRRLLVSNIQGWT
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| XP_023524029.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita pepo subsp. pepo] | 3.0e-49 | 84.62 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
MLPRHARLQNMT SSRMK NI+VEVYT+RLV SD KTG+DQYVD+DL++QDNRD+FIGRLPVMVNSDLCWMKD+QKRD EFDHGGYFLIKGAEKIFI Q
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
Query: EQICLRRLLVSNIQGWT
EQICLRRL +SN QGWT
Subjt: EQICLRRLLVSNIQGWT
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3BUT1 DNA-directed RNA polymerase subunit beta | 1.9e-46 | 80.67 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLIN--QDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFI
MLPRHARLQNMT SSRMK NIS+E+YT++LV+SD KTGKDQYVD++ + DNRDVFIGRLPVMVNSDLCWMKDEQKRD EFD GGYFLIKGAEKIFI
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLIN--QDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFI
Query: VQEQICLRRLLVSNIQGWT
QEQICLRRL +SN+QGWT
Subjt: VQEQICLRRLLVSNIQGWT
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| A0A5D3D8Y5 DNA-directed RNA polymerase subunit beta | 1.9e-46 | 80.67 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLIN--QDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFI
MLPRHARLQNMT SSRMK NIS+E+YT++LV+SD KTGKDQYVD++ + DNRDVFIGRLPVMVNSDLCWMKDEQKRD EFD GGYFLIKGAEKIFI
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLIN--QDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFI
Query: VQEQICLRRLLVSNIQGWT
QEQICLRRL +SN+QGWT
Subjt: VQEQICLRRLLVSNIQGWT
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| A0A6J1C950 DNA-directed RNA polymerase subunit beta | 2.9e-50 | 85.47 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
MLPRHARLQNMT SSRMK NI+VEVYT+RLV SD KTGKDQYVD+DL++QDNR++FIGRLPVMVNSDLCWMK+EQKRD EFDHGGYFLIKGAEKIFI Q
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
Query: EQICLRRLLVSNIQGWT
EQICLRRL +SNIQGWT
Subjt: EQICLRRLLVSNIQGWT
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| A0A6J1FHZ2 DNA-directed RNA polymerase subunit beta | 1.4e-49 | 84.62 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
MLPRHARLQNMT SSRMK NI+VEVYT+RLV SD KTG+DQYVD+DL++QDNRD+FIGRLPVMVNSDLCWMKD+QKRD EFDHGGYFLIKGAEKIFI Q
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
Query: EQICLRRLLVSNIQGWT
EQICLRRL +SN QGWT
Subjt: EQICLRRLLVSNIQGWT
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| A0A6J1IXN3 DNA-directed RNA polymerase subunit beta | 3.2e-49 | 83.76 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
+LPRHARLQNMT SSRMK NI+VEVYT+RLV SD KTG+DQYVD+DL++QDNRD+FIGRLPVMVNSDLCWMKD+QKRD EFDHGGYFLIKGAEKIFI Q
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSEFDHGGYFLIKGAEKIFIVQ
Query: EQICLRRLLVSNIQGWT
EQICLRRL +SN QGWT
Subjt: EQICLRRLLVSNIQGWT
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P08518 DNA-directed RNA polymerase II subunit RPB2 | 8.2e-10 | 33.02 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSDKTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRD------SEFDHGGYFLIKGAEKI
+ P+ ARL+N+T SS + ++ Y V + + +E + ++ VFIGRLP+M+ S C++ + + D FD GGYF+I G+EK+
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSDKTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRD------SEFDHGGYFLIKGAEKI
Query: FIVQEQ
I QE+
Subjt: FIVQEQ
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| Q6FLD5 DNA-directed RNA polymerase II subunit RPB2 | 3.7e-10 | 33.96 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSDKTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRD------SEFDHGGYFLIKGAEKI
+ P+ ARL+N+T SS + +++ Y V +E + ++ VFIGRLP+M+ S C++ D + D FD GGYF+I G+EK+
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSDKTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRD------SEFDHGGYFLIKGAEKI
Query: FIVQEQ
I QE+
Subjt: FIVQEQ
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| Q753Q4 DNA-directed RNA polymerase II subunit RPB2 | 2.2e-10 | 34.86 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSDKTGKD---QYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRD------SEFDHGGYFLIKGA
M P+ ARL+N+T +S + VE+ R D G+D + + E+ + + +FIGR+P+M+ S C + D + D FD GGYF+I G+
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSDKTGKD---QYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRD------SEFDHGGYFLIKGA
Query: EKIFIVQEQ
EK+ I QE+
Subjt: EKIFIVQEQ
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| Q9LK40 DNA-directed RNA polymerases IV and V subunit 2 | 1.7e-26 | 51.24 | Show/hide |
Query: LPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDE-----QKRDSEFDHGGYFLIKGAEKI
LP HARLQNMT S+R+K N+ VEV+ +V SD KTG+D YV++ +++ +D+ IG +PVMV S LC ++ +K D FD GGYF+IKGAEK+
Subjt: LPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDE-----QKRDSEFDHGGYFLIKGAEKI
Query: FIVQEQICLRRLLVSNIQGWT
FI QEQ+C +RL +SN WT
Subjt: FIVQEQICLRRLLVSNIQGWT
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| Q9LV32 DNA-directed RNA polymerase D subunit 2b | 4.1e-17 | 47.67 | Show/hide |
Query: KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSE-----FDHGGYFLIKGAEKIFIVQEQICLRRLLVSNIQGWT
KTG+D+YV++++++ +D+ IG +PVMV S LC ++ K + + FD GGYF+IKGAEK+FI QEQ+C +RL +SN WT
Subjt: KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSE-----FDHGGYFLIKGAEKIFIVQEQICLRRLLVSNIQGWT
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT3G18090.1 nuclear RNA polymerase D2B | 2.7e-24 | 47.41 | Show/hide |
Query: RLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSE-----FDHGGYFLIKGAEKIFIVQE
RLQNMT S+R+K N VEV+ + ++ D KTG+D+YV++++++ +D+ IG +PVMV S LC ++ K + + FD GGYF+IKGAEK+FI QE
Subjt: RLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRDSE-----FDHGGYFLIKGAEKIFIVQE
Query: QICLRRLLVSNIQGWT
Q+C +RL +SN WT
Subjt: QICLRRLLVSNIQGWT
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| AT3G23780.1 nuclear RNA polymerase D2A | 1.2e-27 | 51.24 | Show/hide |
Query: LPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDE-----QKRDSEFDHGGYFLIKGAEKI
LP HARLQNMT S+R+K N+ VEV+ +V SD KTG+D YV++ +++ +D+ IG +PVMV S LC ++ +K D FD GGYF+IKGAEK+
Subjt: LPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDE-----QKRDSEFDHGGYFLIKGAEKI
Query: FIVQEQICLRRLLVSNIQGWT
FI QEQ+C +RL +SN WT
Subjt: FIVQEQICLRRLLVSNIQGWT
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| AT3G23780.2 nuclear RNA polymerase D2A | 1.2e-27 | 51.24 | Show/hide |
Query: LPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDE-----QKRDSEFDHGGYFLIKGAEKI
LP HARLQNMT S+R+K N+ VEV+ +V SD KTG+D YV++ +++ +D+ IG +PVMV S LC ++ +K D FD GGYF+IKGAEK+
Subjt: LPRHARLQNMTCSSRMKKNISVEVYTRRLVTSD--KTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDE-----QKRDSEFDHGGYFLIKGAEKI
Query: FIVQEQICLRRLLVSNIQGWT
FI QEQ+C +RL +SN WT
Subjt: FIVQEQICLRRLLVSNIQGWT
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| AT4G21710.1 DNA-directed RNA polymerase family protein | 6.5e-10 | 32.46 | Show/hide |
Query: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSDKTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRD------SEFDHGGYFLIKGAEKI
+ P+ ARL+N+T S+ + ++ T+R++ K G D +E QD VFIG++P+M+ S C + ++D +D GGYF+I G+EK+
Subjt: MLPRHARLQNMTCSSRMKKNISVEVYTRRLVTSDKTGKDQYVDEDLINQDNRDVFIGRLPVMVNSDLCWMKDEQKRD------SEFDHGGYFLIKGAEKI
Query: FIVQEQICLRRLLV
I QE++ + V
Subjt: FIVQEQICLRRLLV
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| AT5G45140.1 nuclear RNA polymerase C2 | 4.6e-08 | 39.06 | Show/hide |
Query: DVFIGRLPVMVNSDLCWM--KDEQK----RDSEFDHGGYFLIKGAEKIFIVQEQICLRRLLVSN
+V IGR+P+M+ S C + KDE++ + D GGYF+IKG EK+ ++QEQ+ R+++ +
Subjt: DVFIGRLPVMVNSDLCWM--KDEQK----RDSEFDHGGYFLIKGAEKIFIVQEQICLRRLLVSN
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