CuGenDBv2

Gene ID	CmoCh09G004310
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L39
Genome location	Cmo_Chr09:1923647..1925358
RNA-Seq Expression	CmoCh09G004310
Synteny	CmoCh09G004310
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF3452997.1 hypothetical protein FNV43_RR03430 [Rhamnella rubrinervis]

1.0e-19

94.23

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Query:  VRVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        V++PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG
Subjt:  VRVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

KAF9662792.1 hypothetical protein SADUNF_Sadunf18G0091200 [Salix dunnii]

7.9e-20

77.78

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGVEGRPYFRLEIKI
        +PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKL   G+ Y+++ +++
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGVEGRPYFRLEIKI

PON37200.1 Ribosomal protein [Trema orientale]

1.8e-19

96.08

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Query:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Subjt:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

THU67456.1 hypothetical protein C4D60_Mb05t24810 [Musa balbisiana]

1.0e-19

89.09

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGVEGRP
        +PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG   +P
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGVEGRP

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]

1.8e-19

96.08

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Query:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Subjt:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM35 Uncharacterized protein

8.5e-20

96.08

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Query:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Subjt:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

A0A2P5AKY6 Ribosomal protein

8.5e-20

96.08

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Query:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Subjt:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

A0A2P5ANB0 Ribosomal protein

8.5e-20

96.08

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Query:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Subjt:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

A0A4S8JYN2 Uncharacterized protein

5.0e-20

89.09

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGVEGRP
        +PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLG   +P
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGVEGRP

A0A6J1HDM7 uncharacterized protein LOC111462968

8.5e-20

96.08

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Query:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Subjt:  RVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

1.3e-20

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        +PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

P51425 60S ribosomal protein L39

2.5e-21

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        +PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLG
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

P51426 60S ribosomal protein L39-2

2.5e-21

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        +PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLG
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

Q5SMI4 60S ribosomal protein L39-3

7.4e-21

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        +PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLG
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

Q6KAJ8 60S ribosomal protein L39-1

2.5e-21

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        +PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLG
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

2.7e-18

97.62

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Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

AT3G02190.1 Ribosomal protein L39 family protein

2.9e-20

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        +PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLG
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

AT4G31985.1 Ribosomal protein L39 family protein

9.0e-22

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Query:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
        +PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG
Subjt:  VPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG

Sequences

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CDS sequence

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ATGGTACGTGTTCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACTGACAACAC
GATCAGATACAATGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGTGTGGAAGGAAGGCCCTATTTCCGGCTTGAAATTAAAATTTAG

mRNA sequence

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Protein sequence

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MVRVPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGVEGRPYFRLEIKI

CmoCh09G004310 (gene) of Cucurbita moschata (Rifu) v1 genome