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CmoCh09G005030 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G005030
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionribosomal RNA small subunit methyltransferase H
Genome locationCmo_Chr09:2342952..2347133
RNA-Seq ExpressionCmoCh09G005030
SyntenyCmoCh09G005030
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR002903 - Ribosomal RNA small subunit methyltransferase H


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591615.1 hypothetical protein SDJN03_13961, partial [Cucurbita argyrosperma subsp. sororia]1.7e-11197.32Show/hide
Query:  MALTISFSDLLILSELLEMAFRSSMAKLSLFSFSLFTAFGLHLYCFTAENLP-----EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPL
        MALTISFSDLLILSELLEMAFRSSMAKLSLFSFS FTAFGLHLYCFTAENLP     EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPL
Subjt:  MALTISFSDLLILSELLEMAFRSSMAKLSLFSFSLFTAFGLHLYCFTAENLP-----EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPL

Query:  CSFVDCTVGADNSSTSRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSL
        CSFVDCTVGADNSSTSRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSL
Subjt:  CSFVDCTVGADNSSTSRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSL

Query:  VMNLLICEWILRIMPGKSKSRGHS
        VMNLLICEWILRIMPGKSKSRGHS
Subjt:  VMNLLICEWILRIMPGKSKSRGHS

KAG6608197.1 hypothetical protein SDJN03_01539, partial [Cucurbita argyrosperma subsp. sororia]8.9e-4473.19Show/hide
Query:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF
        ++RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS  F EDSDL A+
Subjt:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF

Query:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
         VLKNFKYMKSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

KAG7037555.1 rsmH, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-4473.19Show/hide
Query:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF
        ++RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS  F EDSDL A+
Subjt:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF

Query:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
         VLKNFKYMKSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

XP_022940206.1 uncharacterized protein LOC111445901 [Cucurbita moschata]8.9e-4473.19Show/hide
Query:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF
        ++RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS  F EDSDL A+
Subjt:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF

Query:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
         VLKNFKYMKSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

XP_038896155.1 ribosomal RNA small subunit methyltransferase H [Benincasa hispida]8.1e-4552.38Show/hide
Query:  SELLEMAFRSSMAKLSLFSFSLFTAFGLHLYCFTAENLP------------------------------------------------------EKRTRST
        SEL EMAFRSSMAK SLFS+S   +       FT    P                                                      ++RTRST
Subjt:  SELLEMAFRSSMAKLSLFSFSLFTAFGLHLYCFTAENLP------------------------------------------------------EKRTRST

Query:  KEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLE------NGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFK
        K+FDE A+Q GDTAAHIPV L+EVLDVFS SSGRPL SFVDCTVGA   S++ ++   E          PIAL KA+DRISA FSEDSDL A+IVLKNFK
Subjt:  KEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLE------NGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFK

Query:  YMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
        Y+KSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  YMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

TrEMBL top hitse value%identityAlignment
A0A0A0LDT0 Uncharacterized protein1.1e-4269.57Show/hide
Query:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAF
        ++RTRSTKEFDE A+  GDTAAHIPV L+EVLDVF++SSGRPL SFVDCTVGA   S++ ++        +     PIAL KA+DRIS FFSEDSDL A+
Subjt:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAF

Query:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
        IVLKNFKY+KSLLADSDEKPLDPGVDG++M LGMSSMQ
Subjt:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

A0A1S3CR02 ribosomal RNA small subunit methyltransferase H9.6e-4471.74Show/hide
Query:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAF
        ++RTRSTKEFDE A+  GDTAAHIPV L+EVLDVFS+SSGRPL SFVDCTVGA   S++ ++        +     PIAL KA+DRIS FFSEDSDL A+
Subjt:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAF

Query:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
        IVLKNFKY+KSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

A0A5A7T697 Ribosomal RNA small subunit methyltransferase H9.6e-4471.74Show/hide
Query:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAF
        ++RTRSTKEFDE A+  GDTAAHIPV L+EVLDVFS+SSGRPL SFVDCTVGA   S++ ++        +     PIAL KA+DRIS FFSEDSDL A+
Subjt:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAF

Query:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
        IVLKNFKY+KSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

A0A6J1FNN0 uncharacterized protein LOC1114459014.3e-4473.19Show/hide
Query:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF
        ++RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS  F EDSDL A+
Subjt:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF

Query:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
         VLKNFKYMKSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

A0A6J1IWR1 uncharacterized protein LOC1114812936.9e-4271.01Show/hide
Query:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSST------SRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF
        ++RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGR L SFVDCTVGA   S+      S ++  +     PIAL KA+DRIS  F EDSDL  +
Subjt:  EKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSST------SRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAF

Query:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
         VLKNFKYMK LLADSDEKPL+PGVDGILM LGMSSMQ
Subjt:  IVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

SwissProt top hitse value%identityAlignment
C6D563 Ribosomal RNA small subunit methyltransferase H1.9e-0433.61Show/hide
Query:  HIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGSRPI-------ALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPL
        HI V L E +D  +   G     +VDCT+G    S  R+   L  G R I       AL  A  R++ +          +V  NF+Y++ +L   D   +
Subjt:  HIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGSRPI-------ALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPL

Query:  D--PGVDGILMYLGMSSMQ
        D  P VDGIL  LG+SS Q
Subjt:  D--PGVDGILMYLGMSSMQ

Arabidopsis top hitse value%identityAlignment
AT5G10910.1 mraW methylase family protein1.8e-1843.97Show/hide
Query:  NLPEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGS------RPIALHKAEDRISAFFSEDSDL
        N  ++RTRS++ + E+A      ++H+PV L EVLD+FS+     L SFVDCT+GA   S+S ++   E  +       P+A       I +       L
Subjt:  NLPEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGS------RPIALHKAEDRISAFFSEDSDL

Query:  NAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
         A IVLKNFKY+KS++AD+  + LD GVDGILM LGMSSMQ
Subjt:  NAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCTGTTTAC
AGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATCGCTGTCCAGTTCGGCGACACTGCTG
CTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGATTGCACCGTCGGTGCAGATAATTCTAGCACA
TCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGAATGCATTCAT
AGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGC
AGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATCCTCAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCTGTTTAC
AGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATCGCTGTCCAGTTCGGCGACACTGCTG
CTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGATTGCACCGTCGGTGCAGATAATTCTAGCACA
TCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCTTTCTTCAGCGAGGATTCTGATTTGAATGCATTCAT
AGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGAGTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGC
AGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATCCTCAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAA
CAGGTGGCCGGAAATAGAAGTGGGGTATATCTTGCGGGTTTATGGAGAATAAAGTAACTGGTATTCACTCCAGAATAAGATCGTAAAAGCTCGATCACAGGGGGGTGGAC
TGCATTTCTCCAGTGAATTAGTTGATCTTCTTATCCGAAAATCCACTTTGGGCTGAAAAGGTATTAGAAGACGCGGCCCTGTGTATACATATCATTTCTTTCCACAGTTT
GGAGGGTAGGGTTGTGAAGCAAACATTTCTGGATATCATAATCCCGAAAACCGAAGGAGATGACTGATCTATAGAAGAAGAGAGGTTGAATCGGCGCTGTAGGAATGCTA
AGCTTAAGGTAATTCGGAAGAATAATGCTGTCTTCTGATAGGACACCAGTGAGTGTGCGGACTTCATTATTATGGCCATCTGGTAGGGTGCACATCAAGGCCAGTCAGTA
AGCGAATCTGCACAACATCCCCTTGAAACGTTGGGAAATGGTTTCCCAGATAAAACTACCTGAAGGGAACACAGATGATCAATGTTAGTTGATAGACTATATGCAGCCAG
CAATGGATAATCAAAAACTAATTATTCCTCATTACGCAATTGTTGCAAACGAGTGTAAAATGCTATATTGTTCTTGTAAACTGCTATAAATTGGAAACAAATTAAATG
Protein sequenceShow/hide protein sequence
MALTISFSDLLILSELLEMAFRSSMAKLSLFSFSLFTAFGLHLYCFTAENLPEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSST
SRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSLVMNLLICEWILRIMPGKSKSRGHS