; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G005110 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G005110
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionreplication protein A 32 kDa subunit A-like
Genome locationCmo_Chr09:2374387..2378699
RNA-Seq ExpressionCmoCh09G005110
SyntenyCmoCh09G005110
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006260 - DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0000781 - chromosome, telomeric region (cellular component)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR014646 - Replication factor A protein 2
IPR014892 - Replication protein A, C-terminal
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591621.1 Replication protein A 32 kDa subunit A, partial [Cucurbita argyrosperma subsp. sororia]2.9e-14598.89Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQT DSSSAKNRETPGLVPATVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
        DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ

Query:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYST+DEFHFKSAA
Subjt:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

KAG7024504.1 Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma]2.2e-14599.26Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQT DSSSAKNRETPGLVPATVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
        DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ

Query:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_022936562.1 replication protein A 32 kDa subunit A-like [Cucurbita moschata]9.0e-147100Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
        DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ

Query:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_022976184.1 replication protein A 32 kDa subunit A-like [Cucurbita maxima]4.2e-14498.53Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFT SQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTAS--SVLPS
        DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTAS  SVLPS
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTAS--SVLPS

Query:  EQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        EQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  EQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

XP_023535200.1 replication protein A 32 kDa subunit A-like [Cucurbita pepo subsp. pepo]6.1e-14397.79Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFT SQTNDSSSAKNR+TPGLVPATVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
        DTKQMDEI DGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQF SSDSIVKTPMQNGSSGY TASSVLPSEQ
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ

Query:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

TrEMBL top hitse value%identityAlignment
A0A0A0LEG7 Uncharacterized protein9.5e-13488.93Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSS+QFDS SGFTSSQTNDSSSAK+RE+PGL+P TVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
        DT QM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKTP+QNGS+GY T SS +PSEQ
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ

Query:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQLK+PMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A1S3CR64 replication protein A 32 kDa subunit A-like5.0e-13590.41Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSS+QFDSGSGFTSSQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
        DTKQM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHF+ECIH+HLRNSKLQNL G GSTQ Q+SDSIVKTP+QNGSSGY T SS +PSEQ
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ

Query:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1CUB8 replication protein A 32 kDa subunit A1.9e-12688.19Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQ  DS+SAK+RE+PGLVP TVKQISEA HSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
        DTKQMD+IQDGMYIRVNGHLKIFQ N QIFAFSVRP+TN DEITFHFIECIH++LRNSKLQ LNGV STQ QSSDS V   +Q+GSSGYQTASS L S Q
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ

Query:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKN DDL+LDYLQLPSSVAKE+GIHRDELSQQLKIP+EKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1F8S8 replication protein A 32 kDa subunit A-like4.4e-147100Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
        DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQ

Query:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1IMU1 replication protein A 32 kDa subunit A-like2.0e-14498.53Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFT SQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTAS--SVLPS
        DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTAS  SVLPS
Subjt:  DTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTAS--SVLPS

Query:  EQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        EQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  EQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

SwissProt top hitse value%identityAlignment
Q5Z8L1 Replication protein A 32 kDa subunit C2.0e-2440Show/hide
Query:  SGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTK
        S +G  ++     S  ++    G VPATV  IS +     +  G     F I+GV+ TNV ++G+V     R+TD+ F +DD TG+I   RW+ D  DT+
Subjt:  SGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTK

Query:  QMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRN--SKLQ
            IQ+G+Y++V  +L  FQ+ KQ  A S+RPI NF+E+  HFIEC+H HL +  SK+Q
Subjt:  QMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRN--SKLQ

Q6H7J5 Replication protein A 32 kDa subunit B6.7e-4435.14Show/hide
Query:  SSSQFDSGSGFTSSQTNDSSSA---------KNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCK
        ++S    G GF  SQ  +++           K+R    L+P TVKQI +AS + ++K+NF +NG++++ V +VG++  K +R TD++F +DDGTGR+   
Subjt:  SSSQFDSGSGFTSSQTNDSSSA---------KNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCK

Query:  RWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTAS
        RW ND+ DTK+M +IQ+G Y+ VNG LK FQ  +Q+ A+SVR ITNF+++T HF+ C+H HL  ++ ++     +     + ++ +  M    S     +
Subjt:  RWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTAS

Query:  SVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKS
        S   + Q+T     N  DL+L+    P+ +  + G+  D +S++L +P E +   I    D G +Y+TID+ H+KS
Subjt:  SVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKS

Q6K9U2 Replication protein A 32 kDa subunit A2.9e-4742.2Show/hide
Query:  MFSSSQFD--SGSGFTSSQ---TNDSSSAKNRETPGLVPATVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGC
        M S SQ D  S S FTSSQ    + ++ +K+R     +P TVKQISEA  S   GE+ A FV++GV+  NV +VG VS K ERNTD++F +DDGTGR+  
Subjt:  MFSSSQFD--SGSGFTSSQ---TNDSSSAKNRETPGLVPATVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGC

Query:  KRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTA
         RWVND  D+ +   +Q+GMY+ V G LK  Q  K+  AF++RP+T+++E+T HFI+C+  HL N+K Q    +GS     + S + +   NG S   T 
Subjt:  KRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTA

Query:  SSVLPSEQHTVDV----KKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSA
        +SV  +    + V    K + +  +L+  + P++V  E G+H DE+ ++ ++P  KI  +I  L D G IYSTIDE H+KSA
Subjt:  SSVLPSEQHTVDV----KKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSA

Q8LFJ8 Replication protein A 32 kDa subunit B6.5e-4739.07Show/hide
Query:  FSSSQFDSGSGFTSSQT-----NDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWV
        F  +   +G GF  SQ        SSS KNR+   L+P T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F+VDDGTG + C RW 
Subjt:  FSSSQFDSGSGFTSSQT-----NDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWV

Query:  NDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQN---LNGVGSTQFQSSDSIVKTPMQNGSSGYQTA-
        +   +T++M+ ++ GMY+R++GHLKIFQ  + +  FSVRP+T+F+EI  HF EC++ H+ N+KL+         + + Q   S + TP    +  YQT  
Subjt:  NDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQN---LNGVGSTQFQSSDSIVKTPMQNGSSGYQTA-

Query:  SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        S+  P++ +  D        +L+YL  P  +  E G+H D ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Subjt:  SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

Q9ZQ19 Replication protein A 32 kDa subunit A3.9e-6850.18Show/hide
Query:  MFSSSQFD-----SGSGFTSSQ-----TNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR
        MFSSSQF+     SG GF SSQ      + SS+AKNR+  GLVP TVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ F +DDGTGR
Subjt:  MFSSSQFD-----SGSGFTSSQ-----TNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR

Query:  IGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGY
        I CKRWV++TFD ++M+ ++DG Y+R++GHLK FQ   Q+  FSVRPI +F+E+TFH+IECIH + +NS+ Q       TQ       V T  Q GS+  
Subjt:  IGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGY

Query:  QTA--SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK
        Q    + V+ S+ +  + +KN DD+ILDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  QTA--SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK

Arabidopsis top hitse value%identityAlignment
AT2G24490.1 replicon protein A22.8e-6950.18Show/hide
Query:  MFSSSQFD-----SGSGFTSSQ-----TNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR
        MFSSSQF+     SG GF SSQ      + SS+AKNR+  GLVP TVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ F +DDGTGR
Subjt:  MFSSSQFD-----SGSGFTSSQ-----TNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR

Query:  IGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGY
        I CKRWV++TFD ++M+ ++DG Y+R++GHLK FQ   Q+  FSVRPI +F+E+TFH+IECIH + +NS+ Q       TQ       V T  Q GS+  
Subjt:  IGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGY

Query:  QTA--SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK
        Q    + V+ S+ +  + +KN DD+ILDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  QTA--SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK

AT2G24490.2 replicon protein A22.8e-6950.18Show/hide
Query:  MFSSSQFD-----SGSGFTSSQ-----TNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR
        MFSSSQF+     SG GF SSQ      + SS+AKNR+  GLVP TVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ F +DDGTGR
Subjt:  MFSSSQFD-----SGSGFTSSQ-----TNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR

Query:  IGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGY
        I CKRWV++TFD ++M+ ++DG Y+R++GHLK FQ   Q+  FSVRPI +F+E+TFH+IECIH + +NS+ Q       TQ       V T  Q GS+  
Subjt:  IGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGY

Query:  QTA--SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK
        Q    + V+ S+ +  + +KN DD+ILDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  QTA--SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFK

AT3G02920.1 Replication protein A, subunit RPA324.6e-4839.07Show/hide
Query:  FSSSQFDSGSGFTSSQT-----NDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWV
        F  +   +G GF  SQ        SSS KNR+   L+P T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F+VDDGTG + C RW 
Subjt:  FSSSQFDSGSGFTSSQT-----NDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWV

Query:  NDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQN---LNGVGSTQFQSSDSIVKTPMQNGSSGYQTA-
        +   +T++M+ ++ GMY+R++GHLKIFQ  + +  FSVRP+T+F+EI  HF EC++ H+ N+KL+         + + Q   S + TP    +  YQT  
Subjt:  NDTFDTKQMDEIQDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQN---LNGVGSTQFQSSDSIVKTPMQNGSSGYQTA-

Query:  SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
        S+  P++ +  D        +L+YL  P  +  E G+H D ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Subjt:  SSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA

AT3G02920.2 Replication protein A, subunit RPA321.0e-4739.76Show/hide
Query:  SSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLK
        SS +NR+   L+P T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F+VDDGTG + C RW +   +T++M+ ++ GMY+R++GHLK
Subjt:  SSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYIRVNGHLK

Query:  IFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQN---LNGVGSTQFQSSDSIVKTPMQNGSSGYQTA-SSVLPSEQHTVDVKKNCDDLILDYL
        IFQ  + +  FSVRP+T+F+EI  HF EC++ H+ N+KL+         + + Q   S + TP    +  YQT  S+  P++ +  D        +L+YL
Subjt:  IFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQN---LNGVGSTQFQSSDSIVKTPMQNGSSGYQTA-SSVLPSEQHTVDVKKNCDDLILDYL

Query:  QLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA
          P  +  E G+H D ++++L+IP+ ++  ++  L ++G IYST+DE  FKS A
Subjt:  QLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCTTCTCAGACCAATGACTCTTCTTCGGCGAAGAATCGAGAAACGCCGGGCCTGGTTCCGGCAACTGT
AAAACAGATAAGCGAAGCTTCCCATTCTGGCGAAGAGAAGGCCAACTTCGTAATCAACGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTG
AAAGGAATACGGACATCACATTCATTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAATGACACTTTCGACACCAAGCAAATGGATGAAATACAAGAT
GGAATGTATATACGGGTTAATGGGCATTTGAAAATATTCCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTATTACAAATTTTGATGAAATTACCTTCCACTT
TATTGAATGCATACATGAGCACTTGCGGAATTCCAAGTTACAGAATCTCAATGGAGTTGGATCGACACAGTTCCAATCCTCGGATTCAATTGTGAAGACTCCAATGCAGA
ATGGCTCGAGTGGATATCAGACAGCATCTTCAGTACTACCATCTGAGCAGCACACTGTTGATGTTAAGAAGAATTGTGATGACTTGATCCTCGACTATCTTCAGCTGCCC
TCCAGCGTTGCCAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTAAAGATTCCAATGGAGAAAATACTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTT
GATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAG
mRNA sequenceShow/hide mRNA sequence
ACATTGCCGCTCGCAAGATCGGGCGGGAAATCTGAGAATCAGTGGCGGGAAAACGAAAAGCTTCTACTTCATAAGTTCATAACTGCATAGCAATTCTTCACCCGCTTTCC
GTTGTTGATTGTTGATCGAGTTGTTAATCGCAGGGTTGTAAAGAATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCTTCTCAGACCAATGACTCTTCT
TCGGCGAAGAATCGAGAAACGCCGGGCCTGGTTCCGGCAACTGTAAAACAGATAAGCGAAGCTTCCCATTCTGGCGAAGAGAAGGCCAACTTCGTAATCAACGGCGTTGA
CATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTCATTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGG
TAAATGACACTTTCGACACCAAGCAAATGGATGAAATACAAGATGGAATGTATATACGGGTTAATGGGCATTTGAAAATATTCCAAAGTAACAAGCAAATATTTGCATTC
TCTGTAAGGCCTATTACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACATGAGCACTTGCGGAATTCCAAGTTACAGAATCTCAATGGAGTTGGATCGAC
ACAGTTCCAATCCTCGGATTCAATTGTGAAGACTCCAATGCAGAATGGCTCGAGTGGATATCAGACAGCATCTTCAGTACTACCATCTGAGCAGCACACTGTTGATGTTA
AGAAGAATTGTGATGACTTGATCCTCGACTATCTTCAGCTGCCCTCCAGCGTTGCCAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTAAAGATTCCAATG
GAGAAAATACTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAGGATTTTGGAACGGGTAAAGT
GCAAACCTATGTCAGTACTAAAAGCATTATGGGTAAAGTTCAAACTTTTATCCTTTTTTTTTTTTTTTTTACTGCCCCTTTCAAAACCTCCAGAATTCAAAGTATATGGT
GTTTTGAAGCTTTATTTCTCTAAATACATAATTTTAGGAGGAAAAGTATATGGTCTATCAATTAGTCGATTAATTTTATATCATTGATCCATCAGTTGATTGTTGATCGA
TAAGCC
Protein sequenceShow/hide protein sequence
MFSSSQFDSGSGFTSSQTNDSSSAKNRETPGLVPATVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQD
GMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQNLNGVGSTQFQSSDSIVKTPMQNGSSGYQTASSVLPSEQHTVDVKKNCDDLILDYLQLP
SSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA