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CmoCh09G005360 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G005360
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr09:2547217..2547525
RNA-Seq ExpressionCmoCh09G005360
SyntenyCmoCh09G005360
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3446462.1 hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis]1.5e-1449.04Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPS-IVSRSF
        MGIK W  S SQSIRLGQ+   SN    +   GW+ +W+K K++K +    S V L++SY+PN Y  NF+Q    ++PD+L RSFSARFADP+ I   +F
Subjt:  MGIK-WRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPS-IVSRSF

Query:  RLLD
         LLD
Subjt:  RLLD

KAG6591653.1 hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia]3.9e-5099.02Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MGIKWRNSRSQSIRLGQSCGS NEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

KGN60340.2 hypothetical protein Csa_000895 [Cucumis sativus]2.8e-4084.31Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MG+KWRNSRSQSIRLGQSC SSNEQESKRL GWQILW+K KKEKR++FSCSSVELRSSYNPNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

XP_022936244.1 uncharacterized protein LOC111442916 [Cucurbita moschata]6.0e-51100Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

XP_023536137.1 uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]3.0e-5099.02Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MGIKWRNSRSQSIRLGQSCGSSNEQESKRL GWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

TrEMBL top hitse value%identityAlignment
A0A0A0LJH9 Uncharacterized protein1.3e-4084.31Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MG+KWRNSRSQSIRLGQSC SSNEQESKRL GWQILW+K KKEKR++FSCSSVELRSSYNPNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

A0A251RD41 Uncharacterized protein4.1e-1350.94Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKE-KRRIFSCSSVELR-SSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRS
        MGIK W NSRSQS+RLGQ    SN  +  R  GWQ  W+KFK + K++ FS S+V  + +SY+P  Y  NF++     +PD+L RSFSARFADPS++  +
Subjt:  MGIK-WRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKE-KRRIFSCSSVELR-SSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRS

Query:  FR-LLD
         R LLD
Subjt:  FR-LLD

A0A540LRN7 Uncharacterized protein1.8e-1348.62Show/hide
Query:  MGIK-WRNSRSQSIRLGQSC---GSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIV
        MGI+ WRNSRSQSIRLG +    G+ N+ ++    GWQ  W++FK E+++ F  S+V  + ++SY+P  Y  NF+Q     +PD+L RSFSARFADPS V
Subjt:  MGIK-WRNSRSQSIRLGQSC---GSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIV

Query:  SRSFR-LLD
            R LLD
Subjt:  SRSFR-LLD

A0A5N5I1S5 Pentatricopeptide repeat-containing protein4.8e-1451.4Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCG-SSNEQESKRLFGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSR
        MGI+ WRNSRSQSIRLG +    SN  +S+   GWQ  W++FK E+++IF  S+V  + ++SY+P+ Y  NF+Q     +PD+L RSFSARFADPS V  
Subjt:  MGIK-WRNSRSQSIRLGQSCG-SSNEQESKRLFGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSR

Query:  SFR-LLD
          R LLD
Subjt:  SFR-LLD

A0A6J1F7R9 uncharacterized protein LOC1114429162.9e-51100Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G25735.1 unknown protein1.2e-0434.95Show/hide
Query:  NSRSQSIRLGQSCGSSNEQE-----SKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQ-ENW--GSDPDDLCRSFSARFADPSIVSRSF
        +S  ++I LG+   S  EQ+      + L  W++L  K K    R  S   V    +Y P  Y LNF+Q   W    +P++L RSFS RFADP+ +  + 
Subjt:  NSRSQSIRLGQSCGSSNEQE-----SKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQ-ENW--GSDPDDLCRSFSARFADPSIVSRSF

Query:  RLL
         LL
Subjt:  RLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATCAAATGGCGCAATTCACGTAGCCAAAGCATCAGGTTAGGTCAAAGCTGTGGGTCTTCGAATGAACAAGAAAGCAAACGGCTCTTCGGATGGCAGATTTTGTG
GCAGAAATTCAAGAAGGAGAAGAGAAGAATCTTCAGTTGTTCTTCAGTTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGG
GCTCTGATCCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTTGCGGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATCAAATGGCGCAATTCACGTAGCCAAAGCATCAGGTTAGGTCAAAGCTGTGGGTCTTCGAATGAACAAGAAAGCAAACGGCTCTTCGGATGGCAGATTTTGTG
GCAGAAATTCAAGAAGGAGAAGAGAAGAATCTTCAGTTGTTCTTCAGTTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGG
GCTCTGATCCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTTGCGGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA
Protein sequenceShow/hide protein sequence
MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD