CuGenDBv2

Gene ID	CmoCh09G005690
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	t-SNARE coiled-coil homology domain-containing protein
Genome location	Cmo_Chr09:2759106..2762561
RNA-Seq Expression	CmoCh09G005690
Synteny	CmoCh09G005690
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015031 - protein transport (biological process) GO:0005634 - nucleus (cellular component) GO:0030173 - integral component of Golgi membrane (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR000727 - Target SNARE coiled-coil homology domain IPR039897 - BET1-like protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591687.1 Bet1-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-44

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Query:  SSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERKRP
        +SSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN  K P
Subjt:  SSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERKRP

XP_008466185.1 PREDICTED: bet1-like protein At1g29060 [Cucumis melo]

1.3e-40

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MASSSFRGGSSFYNG+AAP+RSREGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

XP_022935829.1 bet1-like protein At4g14600 [Cucurbita moschata]

1.0e-45

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN R+
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

XP_022976307.1 bet1-like protein At1g29060 [Cucurbita maxima]

1.0e-45

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN R+
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

XP_038896659.1 bet1-like protein At1g29060 [Benincasa hispida]

4.8e-40

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MASSSFRGGSSFYN NAA YRSREGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHL4 t-SNARE coiled-coil homology domain-containing protein

1.5e-39

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MASSSFRGGSSFYNG+AA +RSREGLSTR AA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

A0A1S3CQM7 bet1-like protein At1g29060

6.2e-41

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MASSSFRGGSSFYNG+AAP+RSREGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

A0A5A7TAQ3 Bet1-like protein

6.2e-41

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MASSSFRGGSSFYNG+AAP+RSREGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

A0A6J1F6I9 bet1-like protein At4g14600

4.9e-46

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN R+
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

A0A6J1IFD8 bet1-like protein At1g29060

4.9e-46

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN R+
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

SwissProt top hits

e value

%identity

Alignment

Q8L9S0 Bet1-like protein At1g29060

3.6e-30

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MAS+   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV++L+NIA +IG+EAK Q DFLD+LQMTLI+AQAGVK+N RK
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

Q8VXX9 Bet1-like protein At4g14600

1.1e-31

71.57

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Query:  MASSSFRGGS--SFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNE
        MAS+  R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH QV++L+NIA +IG+EAKFQ DFLD+LQMTLI+AQAGVK+N 
Subjt:  MASSSFRGGS--SFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNE

Query:  RK
        RK
Subjt:  RK

Arabidopsis top hits

e value

%identity

Alignment

AT1G29060.1 Target SNARE coiled-coil domain protein

2.6e-31

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Query:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK
        MAS+   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV++L+NIA +IG+EAK Q DFLD+LQMTLI+AQAGVK+N RK
Subjt:  MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK

AT4G14600.1 Target SNARE coiled-coil domain protein

8.0e-33

71.57

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Query:  MASSSFRGGS--SFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNE
        MAS+  R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH QV++L+NIA +IG+EAKFQ DFLD+LQMTLI+AQAGVK+N 
Subjt:  MASSSFRGGS--SFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNE

Query:  RK
        RK
Subjt:  RK

Sequences

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CDS sequence

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ATGGCATCCAGTTCGTTCCGTGGCGGTAGTTCCTTCTACAATGGCAACGCTGCTCCTTATCGCTCCAGGGAGGGTCTTAGCACAAGAACGGCGGCTGCCTCCGATGAAAT
TCAACTTCAGATCGATCCGATGCAAGGGGACTTGGACGACGAGATCGTAGGTCTTCACAGCCAAGTTAAAAGGCTTAGAAATATTGCTCATGACATTGGGACAGAAGCAA
AGTTCCAGCATGATTTTCTAGATCAATTGCAAATGACATTGATCAAAGCTCAAGCAGGGGTGAAGGACAATGAGAGGAAAAGACCTTTTAACTGA

mRNA sequence

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TTTACGCCTCGCCAACGCGCCTCTGATAAACGGGAGCCGGAAAATCCCGATTTGCTCTGTGCTCTCACCTTCCGAACCGAAGACTCTGAAACTGATCCTCGCAATTCGTC
TGTTTCCGATCAGATTGTTCCAGTTCTGATTAGCTTTTCATTCTGTATCTAATGGCATCCAGTTCGTTCCGTGGCGGTAGTTCCTTCTACAATGGCAACGCTGCTCCTTA
TCGCTCCAGGGAGGGTCTTAGCACAAGAACGGCGGCTGCCTCCGATGAAATTCAACTTCAGATCGATCCGATGCAAGGGGACTTGGACGACGAGATCGTAGGTCTTCACA
GCCAAGTTAAAAGGCTTAGAAATATTGCTCATGACATTGGGACAGAAGCAAAGTTCCAGCATGATTTTCTAGATCAATTGCAAATGACATTGATCAAAGCTCAAGCAGGG
GTGAAGGACAATGAGAGGAAAAGACCTTTTAACTGA

Protein sequence

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MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERKRPFN

CmoCh09G005690 (gene) of Cucurbita moschata (Rifu) v1 genome