CuGenDBv2

Gene ID	CmoCh09G005840
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transcription initiation factor IIA subunit 2
Genome location	Cmo_Chr09:2871408..2872759
RNA-Seq Expression	CmoCh09G005840
Synteny	CmoCh09G005840
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0005672 - transcription factor TFIIA complex (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0017025 - TBP-class protein binding (molecular function)
InterPro domains	IPR003194 - Transcription initiation factor IIA, gamma subunit IPR009083 - Transcription factor IIA, alpha-helical domain IPR009088 - Transcription factor IIA, beta-barrel IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-46

98.98

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

KAG7031763.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]

3.3e-46

97.96

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++KGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

XP_022133819.1 transcription initiation factor IIA subunit 2 [Momordica charantia]

4.3e-46

98.98

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

XP_022936677.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata]

1.1e-46

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]

2.5e-46

98.98

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BWA2 Transcription initiation factor IIA subunit 2

2.1e-46

98.98

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

A0A6J1F935 Transcription initiation factor IIA subunit 2

5.4e-47

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

A0A6J1FTM1 Transcription initiation factor IIA subunit 2

1.2e-46

98.98

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

A0A6J1ILT9 Transcription initiation factor IIA subunit 2

5.4e-47

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

A0A6J1J100 Transcription initiation factor IIA subunit 2

1.2e-46

98.98

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

SwissProt top hits

e value

%identity

Alignment

A2XZI2 Transcription initiation factor IIA subunit 2

9.2e-44

87.76

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

O74948 Transcription initiation factor IIA subunit 2

2.5e-25

53.68

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ KGHL TYRFCD VWTFI+++ +F+ ++   T  +I+IVA
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

Q0DLD3 Transcription initiation factor IIA subunit 2

9.2e-44

87.76

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

Q39236 Transcription initiation factor IIA subunit 2

4.9e-45

90.82

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

Q54ND1 Transcription initiation factor IIA subunit 2

9.0e-23

55.21

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQ-ETVGRIKIVA
        +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K + KG LHTYRFCD+VWTFIL++A FK E ++   V R+KIVA
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQ-ETVGRIKIVA

Arabidopsis top hits

e value

%identity

Alignment

AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

3.5e-46

90.82

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

3.5e-46

90.82

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QE V R+KIVA
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

Sequences

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CDS sequence

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ATGGCAACGTTTGAACTCTACCGTAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGT
TCTTGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGA
CATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATAA

mRNA sequence

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Protein sequence

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MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVA

CmoCh09G005840 (gene) of Cucurbita moschata (Rifu) v1 genome