; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G005890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G005890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMADS-box transcription factor 23-like isoform X1
Genome locationCmo_Chr09:2898282..2901053
RNA-Seq ExpressionCmoCh09G005890
SyntenyCmoCh09G005890
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002487 - Transcription factor, K-box


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591705.1 Agamous-like MADS-box protein AGL16, partial [Cucurbita argyrosperma subsp. sororia]2.2e-5895.28Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDA
        MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSL GIRMKKD ILMDEIQDLNRKVNLIHQDNMELYKK YGTKDANGAHISSLTNGLS GEDA
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDA

Query:  GIPIDLQLSQPQPQEHAAPERATKLGL
        GIPIDLQLSQPQPQ+H APERATKLGL
Subjt:  GIPIDLQLSQPQPQEHAAPERATKLGL

XP_022936832.1 MADS-box transcription factor 23-like isoform X1 [Cucurbita moschata]3.7e-5890Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH
        MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY              KKVYGTKDANGAH
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH

Query:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
        ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
Subjt:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG

XP_022936836.1 agamous-like MADS-box protein AGL16 isoform X2 [Cucurbita moschata]3.7e-5890Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH
        MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY              KKVYGTKDANGAH
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH

Query:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
        ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
Subjt:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG

XP_022975995.1 MADS-box transcription factor 23-like isoform X3 [Cucurbita maxima]3.1e-5794.44Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDA
        MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SLRGIRMKK+KILMDEIQDLNRKVNLIHQDN ELYKKVYGTKDANGAHISSLTNGLS GEDA
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDA

Query:  GIPIDLQLSQPQPQEHAAPERATKLG
        GIPIDLQLSQPQPQ+H APERATKLG
Subjt:  GIPIDLQLSQPQPQEHAAPERATKLG

XP_023536068.1 MADS-box transcription factor 23-like isoform X2 [Cucurbita pepo subsp. pepo]2.9e-5586.43Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYK--------------KVYGTKDANGAH
        MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLE+SLRGIRMKKDKILMDEIQDLNRKVNLIHQDN ELYK              KVYGTKDANGAH
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYK--------------KVYGTKDANGAH

Query:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
        ISSLTNGLS GEDAGIPIDLQLSQPQPQ+H APERATKLG
Subjt:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG

TrEMBL top hitse value%identityAlignment
A0A6J1F8L0 agamous-like MADS-box protein AGL16 isoform X21.8e-5890Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH
        MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY              KKVYGTKDANGAH
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH

Query:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
        ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
Subjt:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG

A0A6J1FEC1 MADS-box transcription factor 23-like isoform X11.8e-5890Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH
        MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY              KKVYGTKDANGAH
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH

Query:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
        ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
Subjt:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG

A0A6J1IIA1 MADS-box transcription factor 23-like isoform X31.5e-5794.44Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDA
        MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SLRGIRMKK+KILMDEIQDLNRKVNLIHQDN ELYKKVYGTKDANGAHISSLTNGLS GEDA
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDA

Query:  GIPIDLQLSQPQPQEHAAPERATKLG
        GIPIDLQLSQPQPQ+H APERATKLG
Subjt:  GIPIDLQLSQPQPQEHAAPERATKLG

A0A6J1IKT5 MADS-box transcription factor 23-like isoform X11.2e-5485Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH
        MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SLRGIRMKK+KILMDEIQDLNRKVNLIHQDN ELY              KKVYGTKDANGAH
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH

Query:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG
        ISSLTNGLS GEDAGIPIDLQLSQPQPQ+H APERATKLG
Subjt:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLG

A0A6J1IM79 MADS-box transcription factor 23-like isoform X23.1e-5585.11Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH
        MLRQQLQSLHENHRQMMGEELTGLS KDLQNLENQLE+SLRGIRMKK+KILMDEIQDLNRKVNLIHQDN ELY              KKVYGTKDANGAH
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELY--------------KKVYGTKDANGAH

Query:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLGL
        ISSLTNGLS GEDAGIPIDLQLSQPQPQ+H APERATKLGL
Subjt:  ISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLGL

SwissProt top hitse value%identityAlignment
A2RVQ5 Agamous-like MADS-box protein AGL162.3e-2651.41Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKK-----------------VYGTKDAN
        +L++QL +L ENHRQMMGEEL+GLSV+ LQNLENQLE+SLRG+RMKKD++L++EIQ LNR+ NL+HQ+N++L+KK                 V G K AN
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKK-----------------VYGTKDAN

Query:  GAHISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKL
            S LTNGL   + +   + LQLSQPQ  +H    +A +L
Subjt:  GAHISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKL

Q38840 Agamous-like MADS-box protein AGL174.0e-2351.16Show/hide
Query:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNL--------------IHQDNMELYKKVYGTKDANGAHI
        LRQ+L SL EN+RQ+ G EL GLSVK+LQN+E+QLEMSLRGIRMK+++IL +EI++L RK NL              IHQ+N+ELYKK YGT + NG   
Subjt:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNL--------------IHQDNMELYKKVYGTKDANGAHI

Query:  SSLTNGLSFGEDAGIPIDLQLSQPQPQEH
          L + +    ++   + LQLSQP+ Q H
Subjt:  SSLTNGLSFGEDAGIPIDLQLSQPQPQEH

Q6EP49 MADS-box transcription factor 274.7e-2447.52Show/hide
Query:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNM--------------ELYKKVYGTKDANGAHI
        LRQQL +L ENHRQ+MGE+L+GL+VK+LQ+LENQLE+SLR +R KKD +L+DEI +LNRK +L+HQ+NM              ELYKK+Y T+  +  + 
Subjt:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNM--------------ELYKKVYGTKDANGAHI

Query:  SSLT-NGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLGL
         S T    +  E   +P+ L LS       A    A KLGL
Subjt:  SSLT-NGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLGL

Q6Z6W2 MADS-box transcription factor 571.6e-1944.52Show/hide
Query:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDN--------------MELYKKVY-----GTKDA
        LRQQL +L E+H+Q+MGEEL+GL V+DLQ LEN+LE+SLR IRM+KD +L  EI++L+ K +LIHQ+N              +ELY K+      G  DA
Subjt:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDN--------------MELYKKVY-----GTKDA

Query:  NGAHISSLTNGLSFGEDAGIPIDLQLSQPQPQE-HAAPERATKLGL
        N +  SS        ++A +P  L+LSQ Q +E   +   A +LGL
Subjt:  NGAHISSLTNGLSFGEDAGIPIDLQLSQPQPQE-HAAPERATKLGL

Q9SZJ6 Agamous-like MADS-box protein AGL216.8e-2347.41Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDAN-----GAHISSLTNGLS
        +LRQ+L +L ENHRQMMGE+L GLSV +L +LENQ+E+SLRGIRM+K+++L  EIQ+L++K NLIHQ+N++L +KV      N      A++++ TNG +
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDAN-----GAHISSLTNGLS

Query:  FGE------DAGIPIDLQLSQPQPQEHAAPERATK
          E      ++   I LQLSQP+  ++  P RA +
Subjt:  FGE------DAGIPIDLQLSQPQPQEHAAPERATK

Arabidopsis top hitse value%identityAlignment
AT2G14210.1 AGAMOUS-like 448.0e-1941.43Show/hide
Query:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRK--------------VNLIHQDNMELYKKVYGTKDANGAHI
        L+QQLQ L E HR+++GEEL+G++  DLQNLE+QL  SL+G+R+KKD+++ +EI++LNRK              V+++ ++N++L KKV+G    N    
Subjt:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRK--------------VNLIHQDNMELYKKVYGTKDANGAHI

Query:  SSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLGL
        +S  + +S G     P  LQL Q QP   A  E++ +LGL
Subjt:  SSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKLGL

AT2G22630.1 AGAMOUS-like 172.8e-2451.16Show/hide
Query:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNL--------------IHQDNMELYKKVYGTKDANGAHI
        LRQ+L SL EN+RQ+ G EL GLSVK+LQN+E+QLEMSLRGIRMK+++IL +EI++L RK NL              IHQ+N+ELYKK YGT + NG   
Subjt:  LRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNL--------------IHQDNMELYKKVYGTKDANGAHI

Query:  SSLTNGLSFGEDAGIPIDLQLSQPQPQEH
          L + +    ++   + LQLSQP+ Q H
Subjt:  SSLTNGLSFGEDAGIPIDLQLSQPQPQEH

AT3G57230.1 AGAMOUS-like 161.6e-2751.41Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKK-----------------VYGTKDAN
        +L++QL +L ENHRQMMGEEL+GLSV+ LQNLENQLE+SLRG+RMKKD++L++EIQ LNR+ NL+HQ+N++L+KK                 V G K AN
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKK-----------------VYGTKDAN

Query:  GAHISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKL
            S LTNGL   + +   + LQLSQPQ  +H    +A +L
Subjt:  GAHISSLTNGLSFGEDAGIPIDLQLSQPQPQEHAAPERATKL

AT3G57230.2 AGAMOUS-like 161.8e-2351.16Show/hide
Query:  RQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKK-----------------VYGTKDANGAHISSLTNGLSF
        RQMMGEEL+GLSV+ LQNLENQLE+SLRG+RMKKD++L++EIQ LNR+ NL+HQ+N++L+KK                 V G K AN    S LTNGL  
Subjt:  RQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKK-----------------VYGTKDANGAHISSLTNGLSF

Query:  GEDAGIPIDLQLSQPQPQEHAAPERATKL
         + +   + LQLSQPQ  +H    +A +L
Subjt:  GEDAGIPIDLQLSQPQPQEHAAPERATKL

AT4G37940.1 AGAMOUS-like 214.8e-2447.41Show/hide
Query:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDAN-----GAHISSLTNGLS
        +LRQ+L +L ENHRQMMGE+L GLSV +L +LENQ+E+SLRGIRM+K+++L  EIQ+L++K NLIHQ+N++L +KV      N      A++++ TNG +
Subjt:  MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDAN-----GAHISSLTNGLS

Query:  FGE------DAGIPIDLQLSQPQPQEHAAPERATK
          E      ++   I LQLSQP+  ++  P RA +
Subjt:  FGE------DAGIPIDLQLSQPQPQEHAAPERATK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACGGCAGCAACTCCAGAGCTTACATGAAAATCATCGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGTCAAAGATCTGCAGAATCTAGAAAATCAATTGGA
GATGAGTCTCCGTGGCATCCGTATGAAGAAGGACAAAATTTTAATGGATGAGATACAAGACCTAAATAGAAAGGTAAACCTAATTCACCAAGACAATATGGAACTCTATA
AGAAGGTCTATGGAACAAAAGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTTTTGGAGAGGATGCAGGCATACCTATCGACCTTCAGCTCAGCCAG
CCACAGCCACAAGAACATGCGGCACCAGAAAGAGCTACAAAACTAGGACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTACGGCAGCAACTCCAGAGCTTACATGAAAATCATCGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGTCAAAGATCTGCAGAATCTAGAAAATCAATTGGA
GATGAGTCTCCGTGGCATCCGTATGAAGAAGGACAAAATTTTAATGGATGAGATACAAGACCTAAATAGAAAGGTAAACCTAATTCACCAAGACAATATGGAACTCTATA
AGAAGGTCTATGGAACAAAAGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTTTTGGAGAGGATGCAGGCATACCTATCGACCTTCAGCTCAGCCAG
CCACAGCCACAAGAACATGCGGCACCAGAAAGAGCTACAAAACTAGGACTATAGCTACGCTAGCAAAAAGACACCCTACACCAACCAGGAAGATGTTTCTTATTTTGCAT
CAAGAAAACGGTGTATGGTTGCTAATTATCTTTCAATCGACGAGATGTGGTAGAGTAGCGGATTATTCCATACCAAAAGAAACCAGCTTTGTCTAGTTTGTGGTGATTAA
AACAAGCGTATTTTTGTGAAGAGAAGACTATGCAAAACAAAAAATAATTGGAACCGCACCAGCATGCACACTTCATTTTCCAGAAATCTTAAGGTGACAGAAAGAAATTG
TTGGTCCTCTGAGAATCGATCCTGGAACCTTCTCTCCAGAAGGAACATTAGAGAAGCTGAAATTGAAAAGTGGGTTAATCACTCCAACTTGCTTTCCCAATTTACCTCCT
CACAGAATGCTGATTACTGGCCTTGGAACGTTGAAAAGGATGAGATTTTATTCTTCAAAGTCCCTCTCTCAAACATGGACTTCTTCTTGCACGGGAGGGATGCTGAAACG
CAGATACA
Protein sequenceShow/hide protein sequence
MLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKDKILMDEIQDLNRKVNLIHQDNMELYKKVYGTKDANGAHISSLTNGLSFGEDAGIPIDLQLSQ
PQPQEHAAPERATKLGL