CuGenDBv2

Gene ID	CmoCh09G006050
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome location	Cmo_Chr09:3009444..3014180
RNA-Seq Expression	CmoCh09G006050
Synteny	CmoCh09G006050
Gene Ontology terms	GO:0006450 - regulation of translational fidelity (biological process) GO:0034641 - cellular nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:1901564 - organonitrogen compound metabolic process (biological process) GO:0005737 - cytoplasm (cellular component) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0016874 - ligase activity (molecular function)
InterPro domains	IPR003837 - Glu-tRNAGln amidotransferase C subunit IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591723.1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-27

62.5

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD LRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRAD               TG +             +  ++    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
        RAVPAFDEPYIKVP+VL+K+
Subjt:  RAVPAFDEPYIKVPEVLNKD

TQD74560.1 hypothetical protein C1H46_039897 [Malus baccata]

3.9e-23

53.33

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLAETARI+LTP EVEE APKIGQV+DWFGQLQ VDL+++EPSIRAD E                              SF  +    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         AVP+++EPYIKVP+VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

XP_022143239.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia]

2.3e-23

55.83

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLAETARISLTP EVEE APKI QVVDWFGQLQTVDLQS+EPSIRAD E                              +  ++    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         AVP FDEPYI+VP+VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

XP_022975686.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima]

4.5e-27

62.5

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD LRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEP IRAD     SG                         +  ++    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
        RAVPAFDEPYIKVP+VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

XP_023534971.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]

3.1e-28

64.17

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD LRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRAD               TG +             +  ++    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
        RAVPAFDEPYIKVP+VLNKD
Subjt:  RAVPAFDEPYIKVPEVLNKD

TrEMBL top hits

e value

%identity

Alignment

A0A498J7Y1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.2e-23

53.33

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLAETARI+LTP EVEE APKIGQV+DWFGQLQ VDL+++EPSIRAD E                              SF  +    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         AVP ++EPYIKVP+VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

A0A540KK40 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.9e-23

53.33

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLAETARI+LTP EVEE APKIGQV+DWFGQLQ VDL+++EPSIRAD E                              SF  +    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         AVP+++EPYIKVP+VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.2e-23

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLA+TARISLTP +VEE APKI QVVDWFGQLQTVDLQS+EPSIRAD E                              +  ++    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         AVP FDEPYIKVP+VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.1e-23

55.83

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLAETARISLTP EVEE APKI QVVDWFGQLQTVDLQS+EPSIRAD E                              +  ++    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         AVP FDEPYI+VP+VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

A0A6J1IEW2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.2e-27

62.5

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD LRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEP IRAD     SG                         +  ++    F+ REAMI
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
        RAVPAFDEPYIKVP+VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

SwissProt top hits

e value

%identity

Alignment

A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.2e-20

47.5

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLA  ARISL+P E EE APKI QVVDWFGQLQ VDL+S+EPS+RA                 GN              S   +    F  R+A+I
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         +VP++D+PYIKVP VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.7e-21

47.5

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLAETARISL   EVEE APKI QV+DWFGQLQ VDL S+EP+IRAD E                              +   +    F  REA+I
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         AVP++++PY+KVP+VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

C5WR30 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.2e-20

44.17

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLA  ARISL+P E E+  PKI QVVDWFGQLQ VDL+S+EPS+RA                                +S   +    FD R+A++
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         A+P++D+PYIKVP VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.2e-24

51.67

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLAETARISLTP EVEE APKI QV+DWFGQLQ VDLQS+EPSIRAD E                              +   +    F+ REA+I
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         A+P+++EPY+KVP+VLNKD
Subjt:  RAVPAFDEPYIKVPEVLNKD

Q7XZZ1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.2e-20

47.5

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLA  ARISL+P E EE APKI QVVDWFGQLQ VDL+S+EPS+RA                 GN              S   +    F  R+A+I
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         +VP++D+PYIKVP VLNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

Arabidopsis top hits

e value

%identity

Alignment

AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

2.8e-19

40.83

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Query:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI
        PD  RLA+TARISLTP E+EE   KI +V+DWFGQLQ VD+ S+EP+IRA+++              GNL                 +    FD R+++ 
Subjt:  PDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMI

Query:  RAVPAFDEPYIKVPEVLNKD
         ++P+F++ Y+KVP++LNK+
Subjt:  RAVPAFDEPYIKVPEVLNKD

Sequences

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CDS sequence

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mRNA sequence

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ATGTTCGAATGCTTCAGGAATTATGGCCCCGATGCCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTTGAAGAATTGGCGCCTAAAATTGGACA
AGTTGTTGACTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATGGAACCTTCCATTAGAGCAGATCTGGAGGTGTCAATCAGCGGAATGACGCTCCTGAAACATT
TGAAAACAGGTAACCTGGTTATTTTTCAACTTGAGCTATCCCAACATTTGGCAGCAAGCTTTGGCCATAACTTCTACTATCTTTTTGACACCAGAGAGGCCATGATTCGC
GCAGTTCCAGCCTTTGATGAGCCGTATATCAAAGTTCCTGAAGTTCTCAATAAGGACTAAGTGGTTGCGGTTGTGGAGGAGATCGGGAAAACTCAGAATCTGAGGCGTAA
TACAAAATGGAGATCTCTGTATCTTCGTGTTCTTGGAGATTCAGTGCACCATGGTAATGGCCCGTCACTGATTGACGGTGGGATCGCGGCGGTCCGGCACTATTTTCATT
ATCTTCCCTGTAACTTCTTCAACCACTCTCCGCCTTCATCCCGCTCTTCGATCATCCACGGCACCACTTTAGTCGAGTTCTATTCCTCTTCATTTGCTGAATCTTCTGAC
GTTTGA

Protein sequence

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MFECFRNYGPDALRLAETARISLTPGEVEELAPKIGQVVDWFGQLQTVDLQSMEPSIRADLEVSISGMTLLKHLKTGNLVIFQLELSQHLAASFGHNFYYLFDTREAMIR
AVPAFDEPYIKVPEVLNKD

CmoCh09G006050 (gene) of Cucurbita moschata (Rifu) v1 genome