; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G006080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G006080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhosphatase yidA
Genome locationCmo_Chr09:3021013..3021956
RNA-Seq ExpressionCmoCh09G006080
SyntenyCmoCh09G006080
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:1901259 - chloroplast rRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0004521 - endoribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002036 - Endoribonuclease YbeY
IPR006379 - HAD-superfamily hydrolase, subfamily IIB
IPR023214 - HAD superfamily
IPR036412 - HAD-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591726.1 Endoribonuclease YBEY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.1e-6698.53Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVMSSVDNLLAAAEIQKLLFLDTAEGVSR+LRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

KAG7024608.1 Sugar phosphatase YidA [Cucurbita argyrosperma subsp. argyrosperma]7.1e-6698.53Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVMSSVDNLLAAAEIQKLLFLDTAEGVSR+LRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

XP_022936578.1 endoribonuclease YBEY, chloroplastic [Cucurbita moschata]5.4e-6699.26Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

XP_022975664.1 endoribonuclease YBEY, chloroplastic [Cucurbita maxima]2.1e-6597.79Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVMSSVDNLLAAAEIQKLLFLDTAEGVSR+LRPYWSEASGEHASVVQAVP+MLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

XP_023534861.1 endoribonuclease YBEY, chloroplastic [Cucurbita pepo subsp. pepo]5.4e-6699.26Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

TrEMBL top hitse value%identityAlignment
A0A0A0LJV1 Uncharacterized protein4.8e-6089.71Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVM SV+NLLAAAEIQKLLFLDTAEGVS +LRP+WSEA+GEHASVVQAVPDMLEIVP GTSKGSGV++LL+HLGVS+EEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        GIA+SNG+EKTKAVANLIGPSNDEDGVAEVIYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

A0A1S3CQE9 uncharacterized protein LOC1035036111.8e-6292.65Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVMSSV+NLLAAAEIQK+LFLDTAEGVSR+LRPYWSEA+GEHASVVQAVPDMLEIVP GTSKGSGVK+LLDHLGVS+EEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        GIA+SNG+EKTKAVANLIGPSNDEDGVAEVIYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

A0A5A7T6Z7 Pentatricopeptide repeat-containing protein2.0e-5891.54Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVMSSV+NLLAAAEIQK+LFLDTAEGVSR+LRPYWSEA+GEHASVVQAVPDMLEIVP GTSKGSGVK+LLDHLGVS+EEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEV
        GIA+SNG+EKTKAVANLIGPSNDEDGVAE+
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEV

A0A6J1FDM0 endoribonuclease YBEY, chloroplastic2.6e-6699.26Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

A0A6J1IL90 endoribonuclease YBEY, chloroplastic9.9e-6697.79Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AEVMSSVDNLLAAAEIQKLLFLDTAEGVSR+LRPYWSEASGEHASVVQAVP+MLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

SwissProt top hitse value%identityAlignment
P0A8Y5 Sugar phosphatase YidA1.4e-1641.04Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AE M      L    I +   LD A  ++R+      +   E  +V+++ P  LEI+    +KG+GVK L D LG+  EE+MAIGD ENDI M+E A +
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRY
        G+AM N     K VAN +  SN EDGVA  I +Y
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRY

P0A8Y6 Sugar phosphatase YidA1.4e-1641.04Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AE M      L    I +   LD A  ++R+      +   E  +V+++ P  LEI+    +KG+GVK L D LG+  EE+MAIGD ENDI M+E A +
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRY
        G+AM N     K VAN +  SN EDGVA  I +Y
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRY

P0A8Y7 Sugar phosphatase YidA1.4e-1641.04Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AE M      L    I +   LD A  ++R+      +   E  +V+++ P  LEI+    +KG+GVK L D LG+  EE+MAIGD ENDI M+E A +
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRY
        G+AM N     K VAN +  SN EDGVA  I +Y
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRY

P70947 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YitU1.5e-1339.25Show/hide
Query:  LRPYWSEASGEHASVVQ----AVP-DMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASLGIAMSNGAEKTKAVANLIGPSNDEDGV
        +R Y S+    HA V+     A P  ++EI+  G +K  G++ + D+ GV  E ++A GD +ND+EMLE A  G+AM NG +  K +AN    +N+EDGV
Subjt:  LRPYWSEASGEHASVVQ----AVP-DMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASLGIAMSNGAEKTKAVANLIGPSNDEDGV

Query:  AEVIYRY
        A  +  Y
Subjt:  AEVIYRY

Q8L5Z4 Endoribonuclease YBEY, chloroplastic4.2e-5374.26Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AE++SSVD L+A A+IQK++F+DT EGVS V+RPYWSEA+G+ A+VVQA  DMLEIVP GTSKG+GVK+LL+HLGVS +E+MAIGDGENDIEML+LASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        G+A+SNGAEKTKAVA++IG SND+DGVA+ IYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF

Arabidopsis top hitse value%identityAlignment
AT2G25870.1 haloacid dehalogenase-like hydrolase family protein3.0e-5474.26Show/hide
Query:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL
        +AE++SSVD L+A A+IQK++F+DT EGVS V+RPYWSEA+G+ A+VVQA  DMLEIVP GTSKG+GVK+LL+HLGVS +E+MAIGDGENDIEML+LASL
Subjt:  QAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASL

Query:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF
        G+A+SNGAEKTKAVA++IG SND+DGVA+ IYRYAF
Subjt:  GIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATTGGTTGTGTATTACAGGCAGAGGTCATGTCCTCGGTTGATAATCTTTTGGCTGCAGCTGAAATACAGAAACTTCTTTTCTTGGACACTGCCGAGGGAGTTTC
ACGCGTCCTTCGACCATACTGGTCAGAGGCATCAGGGGAACACGCCTCGGTTGTTCAGGCTGTACCAGATATGCTTGAGATCGTCCCCTGTGGAACCTCGAAAGGTAGCG
GAGTAAAATTGTTGCTCGATCATTTGGGAGTTTCTTCCGAGGAGGTAATGGCTATTGGAGATGGGGAAAATGACATTGAGATGCTGGAATTGGCATCTCTTGGAATTGCT
ATGAGCAATGGAGCAGAGAAAACAAAGGCTGTTGCTAACTTAATTGGTCCCAGCAATGATGAAGATGGTGTTGCAGAGGTCATATACAGATATGCATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGATTGGTTGTGTATTACAGGCAGAGGTCATGTCCTCGGTTGATAATCTTTTGGCTGCAGCTGAAATACAGAAACTTCTTTTCTTGGACACTGCCGAGGGAGTTTC
ACGCGTCCTTCGACCATACTGGTCAGAGGCATCAGGGGAACACGCCTCGGTTGTTCAGGCTGTACCAGATATGCTTGAGATCGTCCCCTGTGGAACCTCGAAAGGTAGCG
GAGTAAAATTGTTGCTCGATCATTTGGGAGTTTCTTCCGAGGAGGTAATGGCTATTGGAGATGGGGAAAATGACATTGAGATGCTGGAATTGGCATCTCTTGGAATTGCT
ATGAGCAATGGAGCAGAGAAAACAAAGGCTGTTGCTAACTTAATTGGTCCCAGCAATGATGAAGATGGTGTTGCAGAGGTCATATACAGATATGCATTCTAGACACAGTG
CGGCTTTGAGAAGCTTATGATCTGATTACACAGTCAATTATTGTGATTGAAGGATGCAAATTCTGCCCTTCAACATATTCTTATTAATTGTCTCTCTCGACCAAGCCAAA
CTAAGAGAGTCAAGATTTTTGCCTTTTAGTAGGGATACATAAGTTATTAGCTTAGCCTTTTGATGTTTCATACACAGAATGTCATTGTGTTGAATTACTATTAATCCCAT
ATTCTTTTCAGTAGCCCGGAGCTGGCTAAACATTGTATCCTCTT
Protein sequenceShow/hide protein sequence
MLIGCVLQAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRVLRPYWSEASGEHASVVQAVPDMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASLGIA
MSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF