CuGenDBv2

Gene ID	CmoCh09G006890
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RNase H domain-containing protein
Genome location	Cmo_Chr09:3408487..3409576
RNA-Seq Expression	CmoCh09G006890
Synteny	CmoCh09G006890
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6591792.1 hypothetical protein SDJN03_14138, partial [Cucurbita argyrosperma subsp. sororia]

3.2e-84

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Query:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
        MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY SMDLDLITPIKLPSDSEM AS  T AEKNSLK+ATSNLKKK
Subjt:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK

Query:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
        LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQ AACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
Subjt:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF

XP_022936857.1 uncharacterized protein LOC111443318 [Cucurbita moschata]

6.6e-90

100

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Query:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
        MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
Subjt:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK

Query:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
        LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
Subjt:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF

XP_022976862.1 uncharacterized protein LOC111477106 [Cucurbita maxima]

5.2e-87

97.14

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Query:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
        MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEM ASEKT AEKNSLK+ATSNLKKK
Subjt:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK

Query:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
        LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQ AACYPHNKKAWSKLLKAATKHFKKKKKDPA+QMKLYF
Subjt:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF

XP_023536350.1 uncharacterized protein LOC111797546 [Cucurbita pepo subsp. pepo]

4.6e-83

94.29

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Query:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
        MNMR WEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY SMDLDLITPIKLPSDSEM AS  T+ EKNSLK+ATSNLKKK
Subjt:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK

Query:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
        LLSNGVSIRFGISKSNRKMKKMKNKK+AADFSPKPLQ AACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
Subjt:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF

XP_038898299.1 uncharacterized protein LOC120085999 [Benincasa hispida]

1.3e-69

81.36

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Query:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
        MN++S EDDEE+ERLIKVVEYLEP MSK+LLCKFPDNSAFDF+YSQSTIWSPLVPRPY SMDLD+ITPIKLPSD EM  + +T AEKNSL++ATSNLKKK
Subjt:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK

Query:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHF--KKKKKDPASQMKLYF
        LL NG SI FGISKSNRKM +MKNKKLA+DFSP PLQ  ACYP+NKK WSKLL+AATKHF  KKKKKDP SQMKLYF
Subjt:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHF--KKKKKDPASQMKLYF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L354 Uncharacterized protein

6.0e-65

79.55

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Query:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
        MN++SWEDDEE ERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY SMDLD+ITPIKLPSD E  A    MA KNS K+ATSNL+KK
Subjt:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK

Query:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHF-KKKKKDPASQMKLYF
         L NG S+ FGISKS R   KMKNKKL +DFSP P+Q  ACYP+NKK WSKLL+AATKHF KKKKKDP SQMKLYF
Subjt:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHF-KKKKKDPASQMKLYF

A0A5D3DWX3 Uncharacterized protein

5.1e-64

78.98

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Query:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
        MN++SWEDDEE ERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY SMDLD+ITPIKLPSD         MAEKNS K+ATSNLKKK
Subjt:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK

Query:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHF-KKKKKDPASQMKLYF
        LLSN  SI FGISKS R   KMKN KL +DFSP P++  ACYP+NKK WSKLL+AATKHF KKKKKDP S MKLYF
Subjt:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHF-KKKKKDPASQMKLYF

A0A6J1CL72 uncharacterized protein LOC111012179

1.9e-66

79.78

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Query:  MNMRSWEDD-EEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKK
        MNM+SWEDD EEK+RLIKVVEYLEP+M+KELLCKFPDNSAFDFDYSQSTIWSPLVPR Y SMDLD ITPIKLPSDSEM A E+T  +K+SLK+ATSNLKK
Subjt:  MNMRSWEDD-EEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKK

Query:  KLLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQ-PAACYPHNKKAWSKLLKAATKHF-KKKKKDPASQMKLYF
        KLL NG ++ FG+SKS RK+K+MKNKK+A+DFSP PLQ   +CYP+NKK WSKLLKAATKHF KKKKKDPASQMKL+F
Subjt:  KLLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQ-PAACYPHNKKAWSKLLKAATKHF-KKKKKDPASQMKLYF

A0A6J1F9I6 uncharacterized protein LOC111443318

3.2e-90

100

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Query:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
        MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
Subjt:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK

Query:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
        LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
Subjt:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF

A0A6J1IGW0 uncharacterized protein LOC111477106

2.5e-87

97.14

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Query:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK
        MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEM ASEKT AEKNSLK+ATSNLKKK
Subjt:  MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKK

Query:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF
        LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQ AACYPHNKKAWSKLLKAATKHFKKKKKDPA+QMKLYF
Subjt:  LLSNGVSIRFGISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G15140.1 unknown protein

2.4e-21

41.81

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Query:  EDDEEKER----LIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKKLL
        E++EEKE       KVVEYL+P+M +ELLCKFPDNSAF FDYSQS++WSPL+PR Y S           PSD +   S+  +     L E     KKK+ 
Subjt:  EDDEEKER----LIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKKLL

Query:  SNGVSIRFGISKSNRKMKKMKNKKLAA----DFSPKPLQPAACYPHNKKAWSKLLKAATKHFK--KKKKDPASQMKL
              +    K N+K  K+    + +    D SPK      C+P   K W+ +LKAA+KHFK  KKK+D  +  KL
Subjt:  SNGVSIRFGISKSNRKMKKMKNKKLAA----DFSPKPLQPAACYPHNKKAWSKLLKAATKHFK--KKKKDPASQMKL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATATGCGGTCATGGGAAGACGACGAGGAGAAGGAGAGACTGATCAAAGTGGTGGAGTATTTGGAGCCATTGATGTCCAAAGAGCTTCTCTGCAAATTCCCAGACAA
CTCCGCCTTTGATTTTGATTACTCTCAGAGCACCATCTGGTCCCCTTTGGTCCCCCGGCCTTACCAGTCCATGGATTTGGATTTGATTACCCCCATCAAGCTTCCTTCCG
ATTCCGAAATGGTTGCGTCGGAGAAGACGATGGCGGAGAAGAACAGCTTGAAGGAAGCTACCTCCAACCTCAAGAAGAAGCTTCTCTCCAATGGCGTCAGCATCCGTTTC
GGGATCTCGAAAAGCAACAGGAAGATGAAGAAGATGAAGAACAAGAAATTGGCGGCTGATTTCTCCCCCAAACCTCTGCAACCTGCTGCTTGCTACCCACATAACAAAAA
GGCATGGAGCAAGCTGCTGAAAGCAGCCACCAAGCATTTCAAGAAGAAGAAGAAGGATCCTGCATCTCAAATGAAACTCTATTTCTAA

mRNA sequence

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CCACCACATGACCAACATAATGCCCAATTCAACCACTCTGCTATTCCAACGGTAACTTATCACTGTCTTCTTCCTCCTCTCTCCCTTCCTCTGCATTTCTCCACACCATT
AAAGACAGATTCGAGCTTTTCAGCTGAACCAGAGCTCCGAAGAAGAAGAAGAAGAAGATCCCAAATGAATATGCGGTCATGGGAAGACGACGAGGAGAAGGAGAGACTGA
TCAAAGTGGTGGAGTATTTGGAGCCATTGATGTCCAAAGAGCTTCTCTGCAAATTCCCAGACAACTCCGCCTTTGATTTTGATTACTCTCAGAGCACCATCTGGTCCCCT
TTGGTCCCCCGGCCTTACCAGTCCATGGATTTGGATTTGATTACCCCCATCAAGCTTCCTTCCGATTCCGAAATGGTTGCGTCGGAGAAGACGATGGCGGAGAAGAACAG
CTTGAAGGAAGCTACCTCCAACCTCAAGAAGAAGCTTCTCTCCAATGGCGTCAGCATCCGTTTCGGGATCTCGAAAAGCAACAGGAAGATGAAGAAGATGAAGAACAAGA
AATTGGCGGCTGATTTCTCCCCCAAACCTCTGCAACCTGCTGCTTGCTACCCACATAACAAAAAGGCATGGAGCAAGCTGCTGAAAGCAGCCACCAAGCATTTCAAGAAG
AAGAAGAAGGATCCTGCATCTCAAATGAAACTCTATTTCTAAAGCAATGATTCACAGAATCATCATTTTACAGTGGTCTTATTTCATTTCCTCTGTTTTTTGAAGAACAG
AATATGTGTAATTAACTTTATTCCATAGATTTGTTCCATAGATTCTCATGAAAAAGCAGACCCATAAACAAAGAGATTCATGGGATCGGATTAAGCCAACATGGTATCAA
TCAAATTCTGAAATGAAATGTAAGAGGAACCACCATGAATGACGGCGTTTCTACTTTTCCGGCTAATTTCTTTCATTCTCTTCCTCACCTCCTCCCCTGCT

Protein sequence

Show/hide protein sequence

MNMRSWEDDEEKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYQSMDLDLITPIKLPSDSEMVASEKTMAEKNSLKEATSNLKKKLLSNGVSIRF
GISKSNRKMKKMKNKKLAADFSPKPLQPAACYPHNKKAWSKLLKAATKHFKKKKKDPASQMKLYF

CmoCh09G006890 (gene) of Cucurbita moschata (Rifu) v1 genome