CuGenDBv2

Gene ID	CmoCh09G007030
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L27
Genome location	Cmo_Chr09:3467714..3469580
RNA-Seq Expression	CmoCh09G007030
Synteny	CmoCh09G007030
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR001141 - Ribosomal protein L27e IPR038655 - Ribosomal protein L27e superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022143316.1 60S ribosomal protein L27-like [Momordica charantia]

6.0e-31

82.22

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Query:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        I KYP+ V+RKD T    KKSRVKAFIKLVNYQHLMP RYTLDVDLKDVVNVDCLQSKG+KV A+KEIKKR+E RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

XP_022940098.1 60S ribosomal protein L27-3-like [Cucurbita moschata]

6.0e-31

83.33

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Query:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD T    KKSRVKAFIKLVNYQH+MP RYTLDVDLKDVVNVDCLQSK SKV ASKEIKKRLE+RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

XP_022981139.1 60S ribosomal protein L27-like [Cucurbita maxima]

3.5e-31

82.22

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Query:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD T    KKSRVKAFIKLVNYQH+MP RYTLDVDLKDVVN DCLQSKGSKV A+KEIKKRLE+RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

XP_023523697.1 60S ribosomal protein L27-like [Cucurbita pepo subsp. pepo]

4.6e-31

82.22

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Query:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD T    KKSRVKAFIKLVNYQH+MP RYTLDVDLKDVVN DCLQSKGSKV A+KEIKKRLE+RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

XP_038899503.1 60S ribosomal protein L27-3-like [Benincasa hispida]

9.3e-32

84.44

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Query:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD T    KKSRVKAFIKLVNYQHLMP RYTLDVDLKDVVNVDCLQSKGSKV ASKEIKKR E+RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CNL3 60S ribosomal protein L27

1.4e-30

82.22

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Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD      KKSRVKAFIKLVNYQH+MP RYTLDVDLKDVVNVDCLQSK SKV ASKEIKKRLE+RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

A0A5A7SSA5 60S ribosomal protein L27

1.4e-30

82.22

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Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD      KKSRVKAFIKLVNYQH+MP RYTLDVDLKDVVNVDCLQSK SKV ASKEIKKRLE+RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

A0A6J1CPX4 60S ribosomal protein L27

2.9e-31

82.22

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Query:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        I KYP+ V+RKD T    KKSRVKAFIKLVNYQHLMP RYTLDVDLKDVVNVDCLQSKG+KV A+KEIKKR+E RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

A0A6J1FNC2 60S ribosomal protein L27

2.9e-31

83.33

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Query:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD T    KKSRVKAFIKLVNYQH+MP RYTLDVDLKDVVNVDCLQSK SKV ASKEIKKRLE+RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

A0A6J1J143 60S ribosomal protein L27

1.7e-31

82.22

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Query:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD T    KKSRVKAFIKLVNYQH+MP RYTLDVDLKDVVN DCLQSKGSKV A+KEIKKRLE+RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

SwissProt top hits

e value

%identity

Alignment

P41101 60S ribosomal protein L27

4.1e-22

63.83

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Query:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDL----KDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        I +YP  V+RKD      KKSRVKAFIKLVNY H+MP RYTLD DL    KDVVN D LQ++  KV A +  K RL  RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKDPT----KKSRVKAFIKLVNYQHLMPIRYTLDVDL----KDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

P51419 60S ribosomal protein L27-3

1.9e-27

71.11

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Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD      KKSRVK FIKLVNYQHLMP RYTLDVDLK+V  +D LQSK  KV A KE K +LE RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

Q05462 60S ribosomal protein L27

2.5e-27

72.22

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Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        IKK+P+ V++KD      KKSRVKAF+KLVNYQHLMP RYTLDVDLKD V  D LQSK  KV A KE KK LE RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

Q8LCL3 60S ribosomal protein L27-2

4.2e-27

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Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD      KKSRVK FIKLVNYQHLMP RYTLDVDLK+V  +D L+SK  KV A KE K +LE RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

Q9SKX8 60S ribosomal protein L27-1

5.1e-25

63.33

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Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD      KKSRVK F K++NYQH+MP RYTLD+DLK+VV+ D + SK  KV A KE K + E RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

Arabidopsis top hits

e value

%identity

Alignment

AT2G32220.1 Ribosomal L27e protein family

3.6e-26

63.33

Show/hide

Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD      KKSRVK F K++NYQH+MP RYTLD+DLK+VV+ D + SK  KV A KE K + E RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

AT3G22230.1 Ribosomal L27e protein family

3.0e-28

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Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD      KKSRVK FIKLVNYQHLMP RYTLDVDLK+V  +D L+SK  KV A KE K +LE RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

AT4G15000.1 Ribosomal L27e protein family

1.3e-28

71.11

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Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF
        +KKYP+ V+RKD      KKSRVK FIKLVNYQHLMP RYTLDVDLK+V  +D LQSK  KV A KE K +LE RFKTG NRWFFTKLRF
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRWFFTKLRF

AT4G15000.2 Ribosomal L27e protein family

2.1e-21

67.95

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Query:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKT
        +KKYP+ V+RKD      KKSRVK FIKLVNYQHLMP RYTLDVDLK+V  +D LQSK  KV A KE K +LE RFKT
Subjt:  IKKYPNMVVRKD----PTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTTCTGGAAAGGCTGTTGTGCTGCCTTGTGTTGCTGCTGTGTGTTGGATGCATGCTTCTAAGCACCAGAAGAAAAATGACGAATTTAGGATTAAAAAGTACCCGAA
CATGGTCGTTCGTAAAGATCCCACGAAGAAATCGAGAGTGAAGGCATTCATCAAGCTTGTGAACTACCAGCACCTCATGCCGATAAGGTACACGCTTGACGTCGATCTCA
AGGACGTGGTTAATGTTGATTGTTTGCAGTCGAAGGGCTCGAAGGTCGATGCGTCGAAGGAGATCAAAAAGAGGTTGGAGAACAGGTTTAAGACTGGGACGAACAGGTGG
TTTTTCACTAAGCTTAGGTTCTGA

mRNA sequence

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Protein sequence

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MASGKAVVLPCVAAVCWMHASKHQKKNDEFRIKKYPNMVVRKDPTKKSRVKAFIKLVNYQHLMPIRYTLDVDLKDVVNVDCLQSKGSKVDASKEIKKRLENRFKTGTNRW
FFTKLRF

CmoCh09G007030 (gene) of Cucurbita moschata (Rifu) v1 genome