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CmoCh09G007370 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G007370
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationCmo_Chr09:3684485..3688945
RNA-Seq ExpressionCmoCh09G007370
SyntenyCmoCh09G007370
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin
IPR028119 - Snapin/Pallidin/Snn1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591843.1 hypothetical protein SDJN03_14189, partial [Cucurbita argyrosperma subsp. sororia]6.3e-8995.92Show/hide
Query:  KFFSLILSPTIAPATSNQLADSSGFEARSLERLRTTVLAEMHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI
        KFFSLILSPTIAPATSNQLADSSGFE RSLERLRTTVLAEMH PEKV DDPANEDSS SVEL TSISRNGDL+EENDLANTNLENSNALANGLSSMLINI
Subjt:  KFFSLILSPTIAPATSNQLADSSGFEARSLERLRTTVLAEMHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI

Query:  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
        IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSIL SIQRRLDNIDRAISMGN+PDTLSSQSSSQTQHG
Subjt:  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG

XP_022936769.1 uncharacterized protein LOC111443260 isoform X1 [Cucurbita moschata]2.0e-7195.71Show/hide
Query:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRIT-------TELDQLL
        MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRIT       TELDQLL
Subjt:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRIT-------TELDQLL

Query:  EAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
        EAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
Subjt:  EAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG

XP_022936774.1 uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata]1.7e-73100Show/hide
Query:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF
        MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF
Subjt:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG

XP_022976873.1 uncharacterized protein LOC111477110 [Cucurbita maxima]3.8e-7096.79Show/hide
Query:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF
        MHSPEKVLDDPANEDSS SVELETSISRNG+LKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLE APFPF
Subjt:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSIL SIQRRLDNIDRAISMGNRPDTLSSQS SQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG

XP_023535159.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo]1.4e-6996.15Show/hide
Query:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF
        MHSPEKVLDDPANEDS+VSVELETSISRNG L+EENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRIT ELDQLLE APFPF
Subjt:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSIL SIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG

TrEMBL top hitse value%identityAlignment
A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 72.7e-5381.7Show/hide
Query:  MHSPEKVLDD-PANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFP
        MH PEK+ DD  ANEDS+VS ELETSIS  GDL+E ND  N NL NSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDR+TTELDQLLE APFP
Subjt:  MHSPEKVLDD-PANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFP

Query:  FIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQ
        FIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAI+MGN PDT SS +SSQ
Subjt:  FIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQ

A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 79.8e-7295.71Show/hide
Query:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRIT-------TELDQLL
        MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRIT       TELDQLL
Subjt:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRIT-------TELDQLL

Query:  EAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
        EAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
Subjt:  EAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 78.0e-74100Show/hide
Query:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF
        MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF
Subjt:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 71.1e-5479.49Show/hide
Query:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF
        MHS EKV DD AN+DS VS ELE SIS NGD++EEND+AN NL +SNALANGLSSML+NI+RDFDSKADDTLKSQSQLS SLDR+T+ELDQLLE APFPF
Subjt:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
        IMQHA RISSVRKRVLSLNSIL S+QRR+DNIDR ISM N PD  SSQSSSQ  +G
Subjt:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 71.8e-7096.79Show/hide
Query:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF
        MHSPEKVLDDPANEDSS SVELETSISRNG+LKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLE APFPF
Subjt:  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPF

Query:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG
        IMQHASRISSVRKRVLSLNSIL SIQRRLDNIDRAISMGNRPDTLSSQS SQTQHG
Subjt:  IMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related4.3e-2761.17Show/hide
Query:  ALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSS
        A+A GLS+ML ++I+DFDSKA DTL SQ +LS SLDR+  ELDQLLE AP PFI+QHASRISSV++RV SLN +L S+QRR+DNID  +S     +  SS
Subjt:  ALANGLSSMLINIIRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSS

Query:  QSS
        +++
Subjt:  QSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTCTTCTCTCTGATCTTATCTCCCACGATTGCGCCGGCGACGTCGAACCAGTTAGCGGATTCTTCTGGATTCGAAGCACGAAGTTTAGAGAGACTGCGAACTAC
GGTATTGGCTGAGATGCACAGTCCGGAGAAAGTACTCGACGATCCTGCCAATGAGGACAGCAGTGTCTCTGTCGAATTGGAGACTTCCATTAGTCGAAATGGCGATCTCA
AGGAAGAAAATGATCTTGCAAACACGAATTTGGAAAACTCTAATGCTCTAGCAAATGGGCTTTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTGAT
GATACTCTTAAGAGCCAGAGCCAGCTTTCATCTTCCCTTGATCGTATCACTACAGAACTGGATCAGTTACTTGAAGCTGCACCTTTTCCATTCATCATGCAGCATGCCTC
GAGGATTTCAAGTGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAGGATCCATACAACGAAGATTAGATAACATAGATCGGGCAATCTCGATGGGCAATCGACCAG
ATACTCTTTCCTCTCAAAGTTCCTCGCAAACTCAACATGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTCTTCTCTCTGATCTTATCTCCCACGATTGCGCCGGCGACGTCGAACCAGTTAGCGGATTCTTCTGGATTCGAAGCACGAAGTTTAGAGAGACTGCGAACTAC
GGTATTGGCTGAGATGCACAGTCCGGAGAAAGTACTCGACGATCCTGCCAATGAGGACAGCAGTGTCTCTGTCGAATTGGAGACTTCCATTAGTCGAAATGGCGATCTCA
AGGAAGAAAATGATCTTGCAAACACGAATTTGGAAAACTCTAATGCTCTAGCAAATGGGCTTTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTGAT
GATACTCTTAAGAGCCAGAGCCAGCTTTCATCTTCCCTTGATCGTATCACTACAGAACTGGATCAGTTACTTGAAGCTGCACCTTTTCCATTCATCATGCAGCATGCCTC
GAGGATTTCAAGTGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAGGATCCATACAACGAAGATTAGATAACATAGATCGGGCAATCTCGATGGGCAATCGACCAG
ATACTCTTTCCTCTCAAAGTTCCTCGCAAACTCAACATGGTTGAAGATTGCAACAAATCGAACTAGTACATCACCCTACAATAGTATTGAAATTTTCGCCCTCGGTCTAT
GTGCACACGCATACAACCTGCACAATTTATCTATTTCCGACTCGTGAGTGGAGTTTTGATGTTACTATTAACATTTAGCTTATGTTTTAGTTTCTCGCATTCACATCATT
TTGTCTCTATGTACTGATGTCATGCCTATATGTATTAATGTCCCACATTGGTTGGACAGGAGAACAAAACACCTTTCCCCAACAATCCTCAACATGTACTCTCATGCATG
CATGCATGCTTGTTCATATTATTGTGTTGACGTGACAGATAATAAATGGATGAACGTAGTATTGAGAAATTTCCACTCGTCAGATGGATGCTTTGACTTGTGATAGATAA
TAAATGGATGGCTGTAGTATTGAGAAATTTTCACTCATCTGATGGATGCTTTGACTTGTGACAGA
Protein sequenceShow/hide protein sequence
MKFFSLILSPTIAPATSNQLADSSGFEARSLERLRTTVLAEMHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINIIRDFDSKAD
DTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILGSIQRRLDNIDRAISMGNRPDTLSSQSSSQTQHG