; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G007960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G007960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptiontRNA_edit domain-containing protein
Genome locationCmo_Chr09:4076661..4081596
RNA-Seq ExpressionCmoCh09G007960
SyntenyCmoCh09G007960
Gene Ontology termsGO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process)
GO:0002161 - aminoacyl-tRNA editing activity (molecular function)
GO:0004812 - aminoacyl-tRNA ligase activity (molecular function)
InterPro domainsIPR036754 - YbaK/aminoacyl-tRNA synthetase-associated domain superfamily
IPR040285 - Prolyl-tRNA editing protein ProX/PRXD1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN54578.1 hypothetical protein Csa_012651 [Cucumis sativus]3.4e-2176.25Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
        MA+EV TRE LLSLLQ+LQ+DFSRYEHPAVL VEAQ     NLGGGLSKNLFLKDKKNRYYI SA ADTK+ LKV+   L
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
XP_004142621.1 proline--tRNA ligase [Cucumis sativus]3.4e-2176.25Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
        MA+EV TRE LLSLLQ+LQ+DFSRYEHPAVL VEAQ     NLGGGLSKNLFLKDKKNRYYI SA ADTK+ LKV+   L
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
XP_008444132.1 PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Cucumis melo]5.7e-2175Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
        MA+EV TRE+LL LLQ+LQ+DFSRYEHPAVL VEAQ     NLGGGLSKNLFLKDKKNRYYI SA ADTK+ LKV+   L
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
XP_022941394.1 prolyl-tRNA synthetase associated domain-containing protein 1 [Cucurbita moschata]8.3e-2073.68Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
        MA+EV TREELL+LLQ+LQIDF++YEHPAVL VEAQ     NLGGG+SKNLFLKDKKNRYY+ SA A TK+ LKV+
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
XP_038898012.1 prolyl-tRNA synthetase associated domain-containing protein 1 [Benincasa hispida]5.7e-2178.95Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
        MA+EV TREELL+LLQ+LQIDFSRYEHPAVL VEAQ     NLGGGLSKNLFLKDKKNRYYI SA AD K+ LKV+
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
TrEMBL top hitse value%identityAlignment
A0A0A0KYL1 tRNA_edit domain-containing protein1.6e-2176.25Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
        MA+EV TRE LLSLLQ+LQ+DFSRYEHPAVL VEAQ     NLGGGLSKNLFLKDKKNRYYI SA ADTK+ LKV+   L
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
A0A1S3BAG3 prolyl-tRNA synthetase associated domain-containing protein 12.8e-2175Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
        MA+EV TRE+LL LLQ+LQ+DFSRYEHPAVL VEAQ     NLGGGLSKNLFLKDKKNRYYI SA ADTK+ LKV+   L
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL
A0A6J1CAT2 uncharacterized protein LOC1110099646.8e-2076.32Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
        MA+EV TREELL+LLQ+ QI FS+YEHPAVL VEAQ     NLGGGLSKNLFLKDKKNRYYI SA ADTK+ LKV+
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
A0A6J1FN76 prolyl-tRNA synthetase associated domain-containing protein 14.0e-2073.68Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
        MA+EV TREELL+LLQ+LQIDF++YEHPAVL VEAQ     NLGGG+SKNLFLKDKKNRYY+ SA A TK+ LKV+
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
A0A6J1J0V9 prolyl-tRNA synthetase associated domain-containing protein 14.0e-2073.68Show/hide
Query:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
        MA+EV TREELL+LLQ+LQIDFS+YEHPAVL VEAQ     NLGGG+SKNLFLKDKKNRYY+ SA + TK+ LKV+
Subjt:  MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVM
SwissProt top hitse value%identityAlignment
Q6NRL0 Prolyl-tRNA synthetase associated domain-containing protein 13.9e-0453.85Show/hide
Query:  REELLSLLQELQIDFSRYEHPAVLAVE-----AQNLGGGLSKNLFLKDKKNR
        R+ELL+ L EL I     EHP V  VE      Q+LGG  SKNLFLKDKK +
Subjt:  REELLSLLQELQIDFSRYEHPAVLAVE-----AQNLGGGLSKNLFLKDKKNR
Arabidopsis top hitse value%identityAlignment
AT1G44835.1 YbaK/aminoacyl-tRNA synthetase-associated domain5.3e-1740.43Show/hide
Query:  TREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL----QGLVWVKEGNSGCVIILSLYFV
        T+++LL  LQEL+ID+S+YEHP VL VE Q     +  G LSKNLFLKDKK+RYYI SA  DTK+ +KV+   L     G+    E   G ++ +SL   
Subjt:  TREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL----QGLVWVKEGNSGCVIILSLYFV

Query:  RSCRGSF-LENHGVTDKKPKAVADQRLESSYRCLAETVDNE
          C   F + N    D     + DQ+ ++  RC+   + N+
Subjt:  RSCRGSF-LENHGVTDKKPKAVADQRLESSYRCLAETVDNE
AT1G44835.2 YbaK/aminoacyl-tRNA synthetase-associated domain5.3e-1740.43Show/hide
Query:  TREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL----QGLVWVKEGNSGCVIILSLYFV
        T+++LL  LQEL+ID+S+YEHP VL VE Q     +  G LSKNLFLKDKK+RYYI SA  DTK+ +KV+   L     G+    E   G ++ +SL   
Subjt:  TREELLSLLQELQIDFSRYEHPAVLAVEAQ-----NLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYL----QGLVWVKEGNSGCVIILSLYFV

Query:  RSCRGSF-LENHGVTDKKPKAVADQRLESSYRCLAETVDNE
          C   F + N    D     + DQ+ ++  RC+   + N+
Subjt:  RSCRGSF-LENHGVTDKKPKAVADQRLESSYRCLAETVDNE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGGAGGTTGTCACCAGGGAAGAGTTGCTTTCGCTGTTGCAGGAGCTTCAAATTGATTTTTCCAGATACGAACATCCTGCTGTATTGGCGGTTGAAGCACAGAA
TTTGGGCGGTGGACTCAGTAAGAATCTGTTCTTGAAGGACAAAAAGAACAGATACTATATTGATTCTGCATCAGCAGACACCAAAATATTCCTAAAAGTCATGAAGTTCT
ATCTGCAAGGCTTGGTTTGGGTAAAGGAGGGAAATTCTGGCTGTGTGATAATTCTTTCACTTTATTTTGTTAGATCTTGCAGGGGTTCATTTCTTGAAAATCATGGTGTT
ACGGACAAGAAGCCTAAGGCAGTTGCAGATCAAAGACTTGAATCATCTTATCGGTGCTTGGCTGAAACTGTAGATAATGAGAAGCTATTTGAAAGCAGGCAGTGGAGTGG
CATCATACCAAATTCATCCTGCAAAAATATCGTCATTCGAAGGGCTAAGGAAGAGAGGTACGATGAACCACCCCATGAATTAATTTCTGGTAAATGGATTAAAATTGGGA
AGAATAGAAATACTTCAGCTATGTTCTCGTCACTTTTTATTATTTTATTTTCAATTTAG
mRNA sequenceShow/hide mRNA sequence
CATCTTGGTGTAAACTTTCGTCCTCAAGGCCTAATCTCTCCGGCGTACTTCTTTGCTCTGAATTTGTGCTTTCTCCTTCAGTATGGCGGAGGAGGTTGTCACCAGGGAAG
AGTTGCTTTCGCTGTTGCAGGAGCTTCAAATTGATTTTTCCAGATACGAACATCCTGCTGTATTGGCGGTTGAAGCACAGAATTTGGGCGGTGGACTCAGTAAGAATCTG
TTCTTGAAGGACAAAAAGAACAGATACTATATTGATTCTGCATCAGCAGACACCAAAATATTCCTAAAAGTCATGAAGTTCTATCTGCAAGGCTTGGTTTGGGTAAAGGA
GGGAAATTCTGGCTGTGTGATAATTCTTTCACTTTATTTTGTTAGATCTTGCAGGGGTTCATTTCTTGAAAATCATGGTGTTACGGACAAGAAGCCTAAGGCAGTTGCAG
ATCAAAGACTTGAATCATCTTATCGGTGCTTGGCTGAAACTGTAGATAATGAGAAGCTATTTGAAAGCAGGCAGTGGAGTGGCATCATACCAAATTCATCCTGCAAAAAT
ATCGTCATTCGAAGGGCTAAGGAAGAGAGGTACGATGAACCACCCCATGAATTAATTTCTGGTAAATGGATTAAAATTGGGAAGAATAGAAATACTTCAGCTATGTTCTC
GTCACTTTTTATTATTTTATTTTCAATTTAGAAAAATTCAACAACCCATTTTTAATTTTTCTTGCTAATTTTTATTGTAAAAATGTTTTTTTTTTCCTTAGGAAGAGTGG
ATTGATTTCTTTCCCGGACATGATTTTGTCTCCCATTAGAAACATAAGAGTTCACCACCATCATCGATAGGTCTCAAATTATTGCATGTGCATCTTTCATTTATGTTCGT
ACAAATCTTTTTTAATCAAATGTCAATTTCCCTTGTGAGGATCCAATATTTTGAAGACATAGTAACGACAAAAATAAAATAAATAAAAATAAAAAATACTCGCAAACTTT
ATATTTGTCACAATTTTTTTAAAAAAAAGTTTTAAAATACTGTTTTTTAAGTTTTTAAGAGGGTATTAATAAAAATTTGAAGAAATTAAAGGGTATTTTCAAATAATTTA
AGAGAAATTTTAAGATATTTTTTTTTAGACAAATGGGAAAATTAATAGATGTTTTATTAATTTTTATCCCACAAAATAAATTAGACATCACCTGGATAAGAAGAAGCATT
GAAGCGGTTCGGTGGACTTGAAGGACTAATCTGCCTATACCTATTCCGAAATAGCCAAGACGCCAACCGATTCCACCACCTGGTACATGCTCTCCCTATCCGTACTCCAT
TTTCAGAATTTCCCGCCGCTCCATTCTCCGGCGGCAATGGCGGTATCTCTTGCCTACAAACTGGGCAAGAGTTGTGAAGCCGAAGCCACGGAACTATACACTCCGAATGG
TATAAATGCTTACAACTCAATTCCCTTGCTTCTCCCCCCACCTCAAACTCCTCCTTACAAACTGGACACTGCGAGTCGTTCTTCAGATGCTCCGCCGCTATCTTCACCGT
CGGTATCCTCTCGATCGCCTCCTCCCCTGCCGGCGGTGGCCCTGGCCGATCGTTCTGTGTCAGGTCTTCAATTAATTCGTCGAGTCTTGGCCCGGTAAAGTAGTCTCTTG
GATTGGCTCTCCGAGGTATTATGGGCTGAATCGGCTGAAACTGGTCGGGGGGACCGAGAACTATGACAGTTCGAGACTGGTTCGGATTTGGGGGTTGTCGGCCGGAATTG
TCCCTCTCATCCAGGCTTCGACTGCGCCGTCGTGTTCGCCAGTGCAGCCATTCGTCCCCTTCCGGATCGCTAAATGATCTCCGGTCGAAATCGTCGAACCTATGCAGCGG
TGGACGGCGGCGGTCCGGGTCTGGGTGTCGGTAATTGAAGAGACGAACCGGTGGGTCTAGCATTAGTGAGAGAGCTTCGAGTAAACGAGTCTCCGGTGAAGGATCGAGTT
CGGGGAGGGGGAGGTGGACCTCTTCAACGAAGTGGCCGAAACAGCGTGGGCATGTGAGGTCCGACGGTTCTGCGGAGGCGAGGGTGACGGTCCGATGGCATTGGTGGCAC
CAGTAGAGGTGGAAGGTTCTGGCATGGCGGCGGTCGTTGGTTGTGCGGGGAGGTGGGCTCAAAGCCATGGGTAGTTTTGTTATATTATGAAAGGATTTGGGAAAGGGAAT
CGGAATATGGGAAGATTATATATATCGGAAAACGATGGGAGAGGACGGGAGAAAGGAATGGCTTCCTGGTTTTGCAGAAGCAATTCCGACAGCCGCCATTTCTGTATTCT
GAGGTTTGTTTAGTTTCAGATTGTTTCGTGGAGATGAAGACAAGGATGAGTGTTACGAGCTTCGCTTCGTCTCCTTCTCTCTTTTATTAATTTAATTTATTTGGAGTGAC
TTGGTATTTCTTTATTTGCTTACAGTCCTATAGCATTGCTTTATTCGATTCTTTAAATTGTTTTCAAATGTATGTCTTCACCCACGTTTTCTGAACCTTTTCTTGCACAG
TGACTCGAGACTCGAACATATGCTAACGTTGTCTCGACGTCTGAATTTCTCGTGACTAACTTGTTCACTCGGTTAGAACAAATGTCGCACAATCGCTATCCTCTTATTGT
AAGAGTGCGATCGTAACAGTGACTCAAGACCCAAACATATGCTGACGTTGTCTCGATGTCCGAATTTCTCGTGACTGACTTCTTCGCTTGGTTAGAACGAGTGCCACACA
ATCGCTATCCTGCTATTGTAAGAGTGTGATTGTAACAGGTAAAAATAATTATTCTTTATTGAATATGATATTCATTCTCTTATAAATTATTATAAATTAACGTCGAAAGT
ATAATAGGATAGGAT
Protein sequenceShow/hide protein sequence
MAEEVVTREELLSLLQELQIDFSRYEHPAVLAVEAQNLGGGLSKNLFLKDKKNRYYIDSASADTKIFLKVMKFYLQGLVWVKEGNSGCVIILSLYFVRSCRGSFLENHGV
TDKKPKAVADQRLESSYRCLAETVDNEKLFESRQWSGIIPNSSCKNIVIRRAKEERYDEPPHELISGKWIKIGKNRNTSAMFSSLFIILFSI