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CmoCh09G008010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G008010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNase H domain-containing protein
Genome locationCmo_Chr09:4097557..4098807
RNA-Seq ExpressionCmoCh09G008010
SyntenyCmoCh09G008010
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAE5964481.1 unnamed protein product [Arabidopsis arenosa]2.6e-0771.74Show/hide
Query:  LIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        L  I++SSIVPVVPK T GA DF F+PTGIA+ AP TENT VPSAL
Subjt:  LIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

KAE8077422.1 hypothetical protein FH972_015987 [Carpinus fangiana]3.5e-1268.33Show/hide
Query:  VWKSMGKTSCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALW
        +W+S    S  +A+IP+IISS+VPVVPKNTRGA DF FIPTGIAS APATE T VP  LW
Subjt:  VWKSMGKTSCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALW

KAF4395965.1 hypothetical protein F8388_013134 [Cannabis sativa]2.6e-0776.09Show/hide
Query:  IISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAQ
        +I SIV VVPKNT GA DFLFIPT IA+NAPATENTQVP AL   Q
Subjt:  IISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAQ

KAG7031676.1 hypothetical protein SDJN02_05717, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-1493.62Show/hide
Query:  ALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        ALIPI+ISSIVPVVPKNTRGA DFLFIPTGIASNAPATENTQVP+AL
Subjt:  ALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

OMO62607.1 hypothetical protein CCACVL1_22724 [Corchorus capsularis]1.0e-1171.19Show/hide
Query:  VWKSMGKTSCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        +W+S    S  +ALIPI+ISSIVPVVPKNTRGA+DF  IPTGIAS APATE T VP+AL
Subjt:  VWKSMGKTSCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

TrEMBL top hitse value%identityAlignment
A0A0A9D4B1 Uncharacterized protein4.4e-0855.93Show/hide
Query:  KTSCIKA--LIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAQ
        +++C ++  L+P+++SS+VPVVPK T GA DF F+PTGIA+ APATE  QVP AL   Q
Subjt:  KTSCIKA--LIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAQ

A0A1R3GX32 Uncharacterized protein5.0e-1271.19Show/hide
Query:  VWKSMGKTSCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        +W+S    S  +ALIPI+ISSIVPVVPKNTRGA+DF  IPTGIAS APATE T VP+AL
Subjt:  VWKSMGKTSCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

A0A5N6RES6 Uncharacterized protein1.7e-1268.33Show/hide
Query:  VWKSMGKTSCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALW
        +W+S    S  +A+IP+IISS+VPVVPKNTRGA DF FIPTGIAS APATE T VP  LW
Subjt:  VWKSMGKTSCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALW

A0A7C9D2D2 Uncharacterized protein (Fragment)6.7e-0968.63Show/hide
Query:  SCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL
        S  +ALIPI++SS+VPVVPK T GASDFL +PTGIA+ AP TE T VP AL
Subjt:  SCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSAL

A0A7J6HLW3 RNase H domain-containing protein1.3e-0776.09Show/hide
Query:  IISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAQ
        +I SIV VVPKNT GA DFLFIPT IA+NAPATENTQVP AL   Q
Subjt:  IISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGACATCTGAAATTCATGAAGCAGATGGAGATTGGTAGTTTTTCTTGCGGGGGAGATATTAAAGTGTGGAAGAGCATGGGGAAAACTTCGTGCATAAAGGCACT
GATTCCCATTATAATATCAAGCATTGTACCAGTTGTGCCAAAAAACACAAGGGGTGCCAGTGACTTCCTCTTTATTCCCACTGGAATTGCTAGCAACGCTCCTGCTACTG
AGAATACCCAAGTGCCCAGCGCACTGTGGAATGCACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGACATCTGAAATTCATGAAGCAGATGGAGATTGGTAGTTTTTCTTGCGGGGGAGATATTAAAGTGTGGAAGAGCATGGGGAAAACTTCGTGCATAAAGGCACT
GATTCCCATTATAATATCAAGCATTGTACCAGTTGTGCCAAAAAACACAAGGGGTGCCAGTGACTTCCTCTTTATTCCCACTGGAATTGCTAGCAACGCTCCTGCTACTG
AGAATACCCAAGTGCCCAGCGCACTGTGGAATGCACAATAA
Protein sequenceShow/hide protein sequence
MDGHLKFMKQMEIGSFSCGGDIKVWKSMGKTSCIKALIPIIISSIVPVVPKNTRGASDFLFIPTGIASNAPATENTQVPSALWNAQ