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CmoCh09G008570 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G008570
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationCmo_Chr09:4428208..4428624
RNA-Seq ExpressionCmoCh09G008570
SyntenyCmoCh09G008570
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024835.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-6997.83Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MS+TNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAF TSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYRHRSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS

XP_022936830.1 uncharacterized protein LOC111443299 [Cucurbita moschata]5.4e-71100Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS

XP_022976599.1 uncharacterized protein LOC111476947 [Cucurbita maxima]1.6e-6795.65Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSSTNLLRFPLL LHSRPPSTLFFPAIKSHLSVVSIAF TSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYIC
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYR+RSS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS

XP_023535140.1 uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo]1.1e-6897.1Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHL VVSIAF TSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYIC
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYRHRSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]2.2e-5682.61Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSST LL+FPLLQ H RPPSTLFFPA+KSHLSVVSI F T+QFL NPSH  A F LMAK PK+D++EQKWS+EGS+V+SLPNGMFRVRLDNEDLILGYI 
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYR RSS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS

TrEMBL top hitse value%identityAlignment
A0A5A7V7J3 Translation initiation factor IF-12.0e-5582.48Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSSTNLL+FPLLQ H RPPSTL FP +KSHLSVVSI+F TSQFL  PSH P  FALMAK PK+D++EQK S+EGS+V+SLPNGMFRVRLDNEDLILGYI 
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYR RSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSS

A0A6J1FET6 uncharacterized protein LOC1114432992.6e-71100Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like2.6e-5580.29Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSSTNLL+FPLLQ   RPPST  FPAIKSH+SVVSI F +SQFL NPSHGP  F  MAK PKS+S+EQK+S+EGS+++SLPNGMFRV+LDNEDLILGYI 
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYRHRS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSS

A0A6J1IP00 uncharacterized protein LOC1114769477.8e-6895.65Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSSTNLLRFPLL LHSRPPSTLFFPAIKSHLSVVSIAF TSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYIC
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYR+RSS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSSS

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like1.3e-5480.29Show/hide
Query:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
        MSSTNLL+FPLLQ   RPP T  FP  KSHLSVVSI F +SQFL NPSHGPA FA MAK PKS+S+EQK+S+EGS+++SLPNGMFRV+LDNEDLILGYI 
Subjt:  MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC

Query:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYRHRS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRSS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic1.1e-2675.71Show/hide
Query:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRS
        EQKW++EG I +SLPNGMFRVRLDNEDLILGY+ GKIR++F+RILPGDRV++EVSRYDS +GRI+YR R+
Subjt:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRS

A6MM71 Translation initiation factor IF-1, chloroplastic1.9e-2675.71Show/hide
Query:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRS
        EQKW +EG I +SLPNGMFRVRLDNEDLILGY+ GKIR++F+RILPGDRV++EVSRYDS++GRI+YR R+
Subjt:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRS

Q09G11 Translation initiation factor IF-1, chloroplastic1.1e-2677.14Show/hide
Query:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRS
        EQKW +EG I +SLPNGMFRVRLDNEDLILGY+ GKIR++F+RILPGDRV++EVSRYDS +GRI+YR RS
Subjt:  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRS

Q94KR7 Translation initiation factor IF-1, chloroplastic2.8e-3070.87Show/hide
Query:  TSQFLRNPSHGPARFAL----MAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHR
        T  FL  P   PA  AL     AKP KS   EQKW +EG I++SLPNGMFRVRLDNEDLILGYI GKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYR R
Subjt:  TSQFLRNPSHGPARFAL----MAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHR

Query:  SSS
        SS+
Subjt:  SSS

Q94KR9 Translation initiation factor IF-1, chloroplastic2.2e-2776.06Show/hide
Query:  STEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHR
        S EQKW++EGSI +SLPNGMFRV+LDN D++LGYI GKIRKNF+R+LPGDRV++EVSRYDS+KGRI+YR R
Subjt:  STEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHR

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein2.2e-2259.77Show/hide
Query:  GPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRS
        G A  +  AKP   + +  K   EG + +SLPNGMFRV L+N D ILGYICGKIRKNF+RILPGD+V+VE+S YDS KGRI++R  S
Subjt:  GPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSNKGRIVYRHRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCACCAATCTCCTCCGTTTCCCTCTCCTTCAGCTCCACTCCCGGCCGCCGTCCACTCTCTTTTTTCCTGCCATTAAATCGCATCTCTCCGTCGTATCGATCGC
TTTTTCGACCTCCCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAG
GCTCTATCGTCGATTCTCTCCCCAATGGAATGTTCAGAGTTCGATTGGATAATGAAGATCTCATTCTTGGCTACATATGTGGTAAAATTCGGAAGAATTTTGTGCGTATT
TTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTAATAAAGGCCGTATTGTCTATAGACATCGAAGCAGTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCACCAATCTCCTCCGTTTCCCTCTCCTTCAGCTCCACTCCCGGCCGCCGTCCACTCTCTTTTTTCCTGCCATTAAATCGCATCTCTCCGTCGTATCGATCGC
TTTTTCGACCTCCCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAG
GCTCTATCGTCGATTCTCTCCCCAATGGAATGTTCAGAGTTCGATTGGATAATGAAGATCTCATTCTTGGCTACATATGTGGTAAAATTCGGAAGAATTTTGTGCGTATT
TTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTAATAAAGGCCGTATTGTCTATAGACATCGAAGCAGTAGTTAG
Protein sequenceShow/hide protein sequence
MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRI
LPGDRVRVEVSRYDSNKGRIVYRHRSSS