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CmoCh09G008580 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G008580
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-H2 finger protein ATL39-like
Genome locationCmo_Chr09:4434312..4434776
RNA-Seq ExpressionCmoCh09G008580
SyntenyCmoCh09G008580
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591965.1 RING-H2 finger protein ATL77, partial [Cucurbita argyrosperma subsp. sororia]7.8e-7998.7Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
        MADPLLTLLFPMET+VSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVR AEKMPAAVRFGSERMVR
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR

Query:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Subjt:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

XP_022936829.1 RING-H2 finger protein ATL39-like [Cucurbita moschata]3.2e-80100Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
        MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR

Query:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Subjt:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

XP_022976597.1 RING-H2 finger protein ATL39-like [Cucurbita maxima]1.2e-7998.7Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
        MADPLLTLLFPMETMVSESASPPV+VHYTVTLDLRTS+IFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR

Query:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Subjt:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

XP_023536164.1 RING-H2 finger protein ATL39-like [Cucurbita pepo subsp. pepo]1.2e-7697.33Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
        MADPLLTLLFPMETMVSESASPPV+VHYTVTLDLRTS+IFSVTIILFFLF+YHVLSGFLQWFL GRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR

Query:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRH
        RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRH
Subjt:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRH

XP_031740449.1 RING-H2 finger protein ATL39-like [Cucumis sativus]1.0e-6280Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFG
        M DPLLTLLFPMETMV ES SPP V+HYTVTLD+RTS+IFS +IILFFLFL+HVLSGFLQWFL  RR G    DVEA M EERR++RAEK  +P  VRFG
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFG

Query:  SERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        SE+MVRRRSEEECAICLEEF+ GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Subjt:  SERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

TrEMBL top hitse value%identityAlignment
A0A0A0L062 RING-type domain-containing protein5.0e-6380Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFG
        M DPLLTLLFPMETMV ES SPP V+HYTVTLD+RTS+IFS +IILFFLFL+HVLSGFLQWFL  RR G    DVEA M EERR++RAEK  +P  VRFG
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFG

Query:  SERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        SE+MVRRRSEEECAICLEEF+ GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Subjt:  SERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

A0A5A7VAT0 RING-H2 finger protein ATL39-like1.1e-6279.38Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFG
        M DPLLTLLFPMETMV ES+SPP V+HYTVTLDLRTS+IFS +IILFFLFL+HVLSGFLQWFL  RR G    DVEA M EERR++RAEK  +P  V+FG
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFG

Query:  SERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        SE+MVRRRSEEECAICLEEF+AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICR+C+AA
Subjt:  SERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

A0A5D3D9M0 RING-H2 finger protein ATL39-like1.1e-6279.38Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFG
        M DPLLTLLFPMETMV ES+SPP V+HYTVTLDLRTS+IFS +IILFFLFL+HVLSGFLQWFL  RR G    DVEA M EERR++RAEK  +P  V+FG
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFG

Query:  SERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        SE+MVRRRSEEECAICLEEF+AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICR+C+AA
Subjt:  SERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

A0A6J1F9E6 RING-H2 finger protein ATL39-like1.5e-80100Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
        MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR

Query:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Subjt:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

A0A6J1IG67 RING-H2 finger protein ATL39-like5.8e-8098.7Show/hide
Query:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
        MADPLLTLLFPMETMVSESASPPV+VHYTVTLDLRTS+IFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR
Subjt:  MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVR

Query:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Subjt:  RRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL101.5e-1153.06Show/hide
Query:  EEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI
        +EEC ICL +F++GE  + LP+CNH FH  CID W  +  TCP CR+C+
Subjt:  EEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI

P0C035 RING-H2 finger protein ATL603.3e-1148.98Show/hide
Query:  ECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        ECA+CL + + G+  + LP CNH FH DCID+WF    TCP+CR+ + +
Subjt:  ECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

Q6NML0 E3 ubiquitin-protein ligase ATL766.6e-1256.25Show/hide
Query:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI
        EEC ICL +F++GE  + LP+CNH FH  CID W     TCP CRHC+
Subjt:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI

Q94BY6 RING-H2 finger protein ATL751.5e-1154.17Show/hide
Query:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI
        EEC ICL +F++GE  + LP+C+H FH  CID W  +  TCP CRHC+
Subjt:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI

Q9LS99 RING-H2 finger protein ATL771.0e-1258.33Show/hide
Query:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI
        EEC ICL +F+AGE  + LP+CNH FH  CID W ++  TCP CRHC+
Subjt:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI

Arabidopsis top hitse value%identityAlignment
AT1G49200.1 RING/U-box superfamily protein1.0e-1254.17Show/hide
Query:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI
        EEC ICL +F++GE  + LP+C+H FH  CID W  +  TCP CRHC+
Subjt:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI

AT1G49210.1 RING/U-box superfamily protein4.7e-1356.25Show/hide
Query:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI
        EEC ICL +F++GE  + LP+CNH FH  CID W     TCP CRHC+
Subjt:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI

AT1G49220.1 RING/U-box superfamily protein1.0e-1253.06Show/hide
Query:  EEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI
        +EEC ICL +F++GE  + LP+CNH FH  CID W  +  TCP CR+C+
Subjt:  EEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI

AT1G53820.1 RING/U-box superfamily protein2.3e-1248.98Show/hide
Query:  ECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
        ECA+CL + + G+  + LP CNH FH DCID+WF    TCP+CR+ + +
Subjt:  ECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

AT3G18773.1 RING/U-box superfamily protein7.2e-1458.33Show/hide
Query:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI
        EEC ICL +F+AGE  + LP+CNH FH  CID W ++  TCP CRHC+
Subjt:  EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTTTCTGAATCCGCGTCTCCTCCAGTTGTCGTCCACTACACCGTAACCCTAGACCTCCGGACCTC
GATGATTTTCTCCGTCACTATAATCCTTTTCTTCCTCTTCCTTTACCACGTTCTCAGCGGCTTCCTCCAGTGGTTCCTCAGCGGCCGGCGCGGCGGAGATGTGGAGGCGG
GAATGGGAGAGGAGCGGCGGGTGAGGCGGGCGGAGAAGATGCCGGCGGCGGTGAGATTTGGGAGCGAGAGAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGT
TTGGAGGAGTTTATGGCCGGAGAAAACTGCCAGGCGTTGCCGGAGTGCAACCATTTTTTTCATTCGGATTGTATTGATGTCTGGTTTAGCAAGAAATTTACGTGCCCGAT
CTGTCGCCATTGTATTGCAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTTTCTGAATCCGCGTCTCCTCCAGTTGTCGTCCACTACACCGTAACCCTAGACCTCCGGACCTC
GATGATTTTCTCCGTCACTATAATCCTTTTCTTCCTCTTCCTTTACCACGTTCTCAGCGGCTTCCTCCAGTGGTTCCTCAGCGGCCGGCGCGGCGGAGATGTGGAGGCGG
GAATGGGAGAGGAGCGGCGGGTGAGGCGGGCGGAGAAGATGCCGGCGGCGGTGAGATTTGGGAGCGAGAGAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGT
TTGGAGGAGTTTATGGCCGGAGAAAACTGCCAGGCGTTGCCGGAGTGCAACCATTTTTTTCATTCGGATTGTATTGATGTCTGGTTTAGCAAGAAATTTACGTGCCCGAT
CTGTCGCCATTGTATTGCAGCTTAG
Protein sequenceShow/hide protein sequence
MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAIC
LEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA