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CmoCh09G008870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G008870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDynein light chain
Genome locationCmo_Chr09:4613917..4615035
RNA-Seq ExpressionCmoCh09G008870
SyntenyCmoCh09G008870
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591993.1 Double-strand break repair protein MRE11, partial [Cucurbita argyrosperma subsp. sororia]3.1e-4598.92Show/hide
Query:  AMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPTQLSVLETV
        AMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPTQLSVLET+
Subjt:  AMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPTQLSVLETV

XP_022936350.1 dynein light chain LC6, flagellar outer arm [Cucurbita moschata]5.6e-55100Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
        MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT

Query:  QLSVLETVKE
        QLSVLETVKE
Subjt:  QLSVLETVKE

XP_022976611.1 dynein light chain LC6, flagellar outer arm [Cucurbita maxima]3.2e-5091.74Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
        MLEGKAVIGETDMLQAMQQ+ALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLF+GSS SE+ +PT
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT

Query:  QLSVLETVK
        Q S+LET+K
Subjt:  QLSVLETVK

XP_023535145.1 dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]7.4e-5599.09Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
        MLEGKA+IGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT

Query:  QLSVLETVKE
        QLSVLETVKE
Subjt:  QLSVLETVKE

XP_038899068.1 dynein light chain 2, cytoplasmic [Benincasa hispida]1.2e-4484.82Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSE---QL
        MLEGKA+IGETDMLQAMQQDAL+LAAKALDSFDVTE TDIARFIKKEFD +YGGGWQCIVGTDFGSFVTHC GCFIYFCVGSLA+LLFRGS+ SE   Q 
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSE---QL

Query:  DPTQLSVLETVK
         PTQ SV+ET+K
Subjt:  DPTQLSVLETVK

TrEMBL top hitse value%identityAlignment
A0A2N9J9Z2 Dynein light chain1.0e-4181.65Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
        MLEGKAVIGETDMLQ MQQDALDLAAKALD FDVTE T+IARFIKKEFDG YG GWQCIVGTDFGSFVTHC GCFIYFC+GSLA+LLF+GS+  E  +  
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT

Query:  QLSVLETVK
        Q S LETVK
Subjt:  QLSVLETVK

A0A6J1CDL8 Dynein light chain4.5e-4280.91Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
        MLEGKA+IGETDMLQ MQQDALDLAAKALDSFDVTE TDIARFIKKEFD ++G GWQCIVGTDFGSFVTHC GCFIYFCVG+LAVLLFRGS+  +Q +PT
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT

Query:  -QLSVLETVK
         Q + LE +K
Subjt:  -QLSVLETVK

A0A6J1FDE1 Dynein light chain2.7e-55100Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
        MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT

Query:  QLSVLETVKE
        QLSVLETVKE
Subjt:  QLSVLETVKE

A0A6J1IHC9 Dynein light chain1.5e-5091.74Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT
        MLEGKAVIGETDMLQAMQQ+ALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLF+GSS SE+ +PT
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPT

Query:  QLSVLETVK
        Q S+LET+K
Subjt:  QLSVLETVK

A0A6J1J2G7 Dynein light chain1.0e-4180.91Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQ-LDP
        MLEGKA++GETDMLQAMQQDALDLAAKALD FDVTE TDIARFIKKEFD  +GGGWQCIVGTDFGSFVTHC GCFIYFCVGSLA+LLFRGS   +Q   P
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQ-LDP

Query:  TQLSVLETVK
        T L+  ET+K
Subjt:  TQLSVLETVK

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm9.8e-1855.06Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR
        M E KAVI   DM + MQQDA+D A +AL+ F++ +  DIA +IKKEFD  Y   W CIVG +FGS+VTH    FIYF +G +AVLLF+
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR

O96860 Dynein light chain 2, cytoplasmic1.7e-1752.81Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR
        M + KAVI   DM + MQQDA+D A +AL+ +++ +  DIA FIKKEFD  Y   W CIVG +FGS+VTH    FIYF +G +A+LLF+
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR

Q22799 Dynein light chain 1, cytoplasmic2.8e-1751.69Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR
        M++ KAVI   DM   MQQDA+D A +AL+ +++ +  DIA +IKKEFD  Y   W CIVG +FGS+VTH    FIYF +G +A+LLF+
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR

Q24117 Dynein light chain 1, cytoplasmic3.7e-1751.69Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR
        M + KAVI   DM + MQQDA+D A +AL+ +++ +  DIA +IKKEFD  Y   W CIVG +FGS+VTH    FIYF +G +A+LLF+
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR

Q3MHR3 Dynein light chain 2, cytoplasmic8.3e-1750.56Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR
        M + KAVI   DM + MQQDA+D A +A++ +++ +  DIA +IKKEFD  Y   W CIVG +FGS+VTH    FIYF +G +A+LLF+
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.9e-2153.26Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSS
        MLEGKA++ ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  YG GWQC+VG++FG F TH  G FIYF + +L  L+F+G+S
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSS

AT3G16120.1 Dynein light chain type 1 family protein3.6e-2355.43Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSS
        MLEGKA + ETDM   MQ  A+ +A+++LD FDV +   IA  IKKEFD  YG GWQC+VGT+FG F TH  G FIYF +G+L  L+F+G++
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSS

AT4G15930.1 Dynein light chain type 1 family protein1.4e-1447.06Show/hide
Query:  KAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR
        +AVI   DM   MQ++A+++A  A + + V +  DIA  IKKEFD  +G  W CIVG +FGS+VTH    F+YF +   AVLLF+
Subjt:  KAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR

AT4G27360.1 Dynein light chain type 1 family protein1.6e-3678.02Show/hide
Query:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGS
        MLEGKAV+G+TDM Q M++DAL LA+KALD FDVTEPT IARFIKKEFD  YG GWQCIVGT FGSFVTHC GCFI+F VGSL +LLF+GS
Subjt:  MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGS

AT5G20110.1 Dynein light chain type 1 family protein5.1e-1451.28Show/hide
Query:  DMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR
        DM   MQ  A   A   LDS +      +A  +KKEFD  YG  W CIVG+ FGSFVTH  GCFIYF +  L VLLF+
Subjt:  DMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGAAGGCAAAGCAGTCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGGACGCTCTGGACCTTGCGGCTAAGGCCCTTGACAGTTTTGATGTCACTGAACC
CACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACGGGATGTATGGTGGAGGATGGCAATGCATAGTGGGAACGGATTTTGGGTCATTTGTGACACATTGTTGTGGAT
GCTTCATCTATTTTTGTGTTGGAAGCCTTGCAGTTTTGCTGTTCAGAGGCTCTTCCGACTCCGAACAACTTGACCCAACTCAACTTTCTGTTTTGGAGACCGTCAAAGAA
TGA
mRNA sequenceShow/hide mRNA sequence
CTAGTGACCACATAGAGAGGGTCTGGACATGGGTGAGCCACACACCAGCCAAACTTTATCCTAAGCTTCTATATAACTAAACCTGCTTCCTTCCCCCTCCGCCCACATCC
GCCACTGCCCCGCCGCCAACTCCGCCGGTGGCAGCCATGTTAGAAGGCAAAGCAGTCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGGACGCTCTGGACCTTGC
GGCTAAGGCCCTTGACAGTTTTGATGTCACTGAACCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACGGGATGTATGGTGGAGGATGGCAATGCATAGTGGGAA
CGGATTTTGGGTCATTTGTGACACATTGTTGTGGATGCTTCATCTATTTTTGTGTTGGAAGCCTTGCAGTTTTGCTGTTCAGAGGCTCTTCCGACTCCGAACAACTTGAC
CCAACTCAACTTTCTGTTTTGGAGACCGTCAAAGAATGATCAGATGTCAATAGAATTCGTGATTTTGAAATGAATAAAATCATTCATGATCATGCGTTTAATTCTTTAAA
GTCGATTTTATGATGAAAAAATTACTTTAAATCGACTTTAAATTATTAAATATATGTGGGTTTTTGTTTTATGCATGTATATCGACCATCTTAATGCTAATATATACATA
TACTTTTGTTAATACGATTTCAACGGAATTTCATACATTATAGTTCAATTTAAACCCATTTCTCGAAATCAAATGGTTCGGTCG
Protein sequenceShow/hide protein sequence
MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPTQLSVLETVKE