CuGenDBv2

Gene ID	CmoCh09G009160
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Histone H2A
Genome location	Cmo_Chr09:4785535..4786780
RNA-Seq Expression	CmoCh09G009160
Synteny	CmoCh09G009160
Gene Ontology terms	GO:0031507 - heterochromatin assembly (biological process) GO:0000786 - nucleosome (cellular component) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR002119 - Histone H2A IPR007125 - Histone H2A/H2B/H3 IPR009072 - Histone-fold IPR032454 - Histone H2A, C-terminal domain IPR032458 - Histone H2A conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

KAF7822852.1 histone H2A.6-like [Senna tora]

3.7e-60

98.46

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
        DVTIANGGVMPNIHNLLLPKKTGTSSK AG
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG

PON55943.1 Histone H2A [Trema orientale]

6.4e-60

98.46

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
        DVTIANGGVMPNIHNLLLPKKTGTSSK +G
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG

XP_004151965.1 histone H2A.6 [Cucumis sativus]

3.4e-61

100

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
        DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG

XP_015953899.1 probable histone H2A.1 [Arachis duranensis]

3.7e-60

95.52

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEEST
        DVTIANGGVMPNIHNLLLPKKTGTSSK AG++ +
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEEST

XP_028761725.1 histone H2A.6 [Prosopis alba]

1.7e-60

99.23

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
        DVTIANGGVMPNIHNLLLPKKTGTSSK AG
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LD22 Histone H2A

1.6e-61

100

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
        DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG

A0A5A7TUA9 Histone H2A

1.6e-61

100

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
        DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG

A0A6J1CC40 Histone H2A

1.6e-61

100

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
        DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG

A0A6J1FA07 Histone H2A

1.6e-61

100

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
        DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG

A0A6J1IHB7 Histone H2A

1.6e-61

100

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
        DVTIANGGVMPNIHNLLLPKKTGTSSKNAG
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAG

SwissProt top hits

e value

%identity

Alignment

A2YVE5 Probable histone H2A.3

2.1e-58

90.91

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE
         VTIANGGVMPNIHNLLLPKK G+S+K A  +
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE

O81826 Probable histone H2A.3

2.5e-59

96.8

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTS
        DVTIANGGVMPNIHNLLLPKK G+S
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTS

Q9C681 Probable histone H2A.1

5.1e-60

92.42

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE
        DVTIANGGVMPNIHNLLLPKKTG S  +A ++
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE

Q9LD28 Histone H2A.6

8.7e-60

97.6

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTS
        DVTIANGGVMPNIHNLLLPKK G S
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTS

Q9LHQ5 Probable histone H2A.2

2.1e-58

90.91

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG AKK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE
        DVTIANGGVMPNIH+LLLPKK G S  +A E+
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE

Arabidopsis top hits

e value

%identity

Alignment

AT1G51060.1 histone H2A 10

3.6e-61

92.42

Show/hide

Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE
        DVTIANGGVMPNIHNLLLPKKTG S  +A ++
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE

AT3G20670.1 histone H2A 13

1.5e-59

90.91

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG AKK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE
        DVTIANGGVMPNIH+LLLPKK G S  +A E+
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTSSKNAGEE

AT4G27230.1 histone H2A 2

1.8e-60

96.8

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTS
        DVTIANGGVMPNIHNLLLPKK G+S
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTS

AT4G27230.2 histone H2A 2

1.8e-60

96.8

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTS
        DVTIANGGVMPNIHNLLLPKK G+S
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTS

AT5G54640.1 Histone superfamily protein

6.2e-61

97.6

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Query:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKTGTS
        DVTIANGGVMPNIHNLLLPKK G S
Subjt:  DVTIANGGVMPNIHNLLLPKKTGTS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACCTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAA
AGCCGGCAAGTACGCCGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTCGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAG
ATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGACGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATG
CCCAACATTCACAATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGAAGAATCAACAAAGGTGAAAAACGTTAAGAATTCTAAGTGTGCTCTGGG
CACATTGGCAATTCATGGAGCTTCTTCATATTGCTAA

mRNA sequence

Show/hide mRNA sequence

ATTTATTGCTCTCTCTCTCGCGACCTCGCCGGAAAATTGCTTTCCATTTTCTCTTCAATTCTTTCGTTCTTCTTCTCCGTCCAACAGATCTCAACTAATGGCAGGTAGAG
GCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACCTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTAC
GCCGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTCGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAAC
GCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGACGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACA
ATCTGCTTCTGCCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGAAGAATCAACAAAGGTGAAAAACGTTAAGAATTCTAAGTGTGCTCTGGGCACATTGGCAATT
CATGGAGCTTCTTCATATTGCTAA

Protein sequence

Show/hide protein sequence

MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVM
PNIHNLLLPKKTGTSSKNAGEESTKVKNVKNSKCALGTLAIHGASSYC

CmoCh09G009160 (gene) of Cucurbita moschata (Rifu) v1 genome