CuGenDBv2

Gene ID	CmoCh09G009650
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	CCR4-NOT transcription complex subunit 9-like
Genome location	Cmo_Chr09:5093236..5093821
RNA-Seq Expression	CmoCh09G009650
Synteny	CmoCh09G009650
Gene Ontology terms	GO:0017148 - negative regulation of translation (biological process) GO:0000932 - P-body (cellular component) GO:0030015 - CCR4-NOT core complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592054.1 CCR4-NOT transcription complex subunit 9, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-22

98.39

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        MSNLPQSHSMNAAFGGPGIGSSIPS+SGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

KAG6607791.1 CCR4-NOT transcription complex subunit 9, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-18

90.32

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        MSNLPQS SM+AAFGGPG G SIPSASGA PNKERKMASSEQLVLDLSNP+LRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

KAG7024932.1 CCR4-NOT transcription complex subunit 9 [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-22

98.39

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        MSNLPQSHSMNAAFGGPGIGSSIPS+SGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

XP_022936269.1 CCR4-NOT transcription complex subunit 9-like [Cucurbita moschata]

1.0e-22

100

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

XP_022976660.1 CCR4-NOT transcription complex subunit 9-like [Cucurbita maxima]

1.0e-22

100

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BI21 cell differentiation protein RCD1 homolog

2.0e-16

85.48

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        M+NLPQS SMNAAFGGP  G SIP A+GA PNKERKMASSEQLVLDLSNP+LRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

A0A6J1F7U4 CCR4-NOT transcription complex subunit 9-like

4.9e-23

100

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

A0A6J1FRT6 CCR4-NOT transcription complex subunit 9-like

7.3e-19

90.32

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        MSNLPQS SM+AAFGGPG G SIPSASGA PNKERKMASSEQLVLDLSNP+LRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

A0A6J1IK32 CCR4-NOT transcription complex subunit 9-like

4.9e-23

100

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

A0A6J1IU99 CCR4-NOT transcription complex subunit 9-like

2.3e-17

87.5

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Query:  MSNLPQSHSMNAAFG--GPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        MSNLPQS SM+AAFG  GPG G SIPSASGA PNKERKMASSEQLVLDLSNP+LRENALLELSK
Subjt:  MSNLPQSHSMNAAFG--GPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G20800.1 Cell differentiation, Rcd1-like protein

2.0e-13

66.13

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK
        M+NLP S SM   FGGP   +  P  +GA  NK+R +AS+EQLVLDLSNPELRENALLELSK
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSK

AT5G12980.1 Cell differentiation, Rcd1-like protein

9.8e-08

54.55

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Query:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSKLKLI
        M+NLP   SM +       G+S PS+S    N +RK++S+EQL+LDLSNPELRENAL ELSK + I
Subjt:  MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSKLKLI

Sequences

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CDS sequence

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ATGTCGAATCTTCCCCAATCGCACTCCATGAATGCTGCGTTTGGAGGTCCTGGTATCGGTTCGTCGATCCCCAGTGCCTCCGGAGCTGCACCGAACAAGGAGCGAAAAAT
GGCTTCTTCGGAGCAACTAGTGCTCGACCTCAGCAACCCGGAACTCCGGGAGAACGCTCTCCTTGAACTGTCGAAGCTCAAGCTAATTACGTAG

mRNA sequence

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Protein sequence

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MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLELSKLKLIT

CmoCh09G009650 (gene) of Cucurbita moschata (Rifu) v1 genome