; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G010040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G010040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionmeiotic recombination protein SPO11-1
Genome locationCmo_Chr09:5340342..5341359
RNA-Seq ExpressionCmoCh09G010040
SyntenyCmoCh09G010040
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0007127 - meiosis I (biological process)
GO:0042138 - meiotic DNA double-strand break formation (biological process)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR002815 - Spo11/DNA topoisomerase VI subunit A
IPR036078 - Spo11/DNA topoisomerase VI subunit A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44213.2 hypothetical protein Csa_019092 [Cucumis sativus]7.1e-3558Show/hide
Query:  MITSIPVSVLDPFPFHKQMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHL
        MIT  P +V DPFPF KQMAYDAKYL+IPQL WLGAFASD   YNLP+QCLIPLT + +                         S   A    C++    
Subjt:  MITSIPVSVLDPFPFHKQMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHL

Query:  LQRKLDPHLRLELESMLQRGVKFEIEALSVHNISFLSEEYLPSKIESELT
          R+   H RLELESML+RGVKFEIEALSVHNISFLS+EYLPSKIESELT
Subjt:  LQRKLDPHLRLELESMLQRGVKFEIEALSVHNISFLSEEYLPSKIESELT

XP_022937001.1 meiotic recombination protein SPO11-1 [Cucurbita moschata]5.2e-3867.86Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLE +     L P                              C+L  R+  PH RLELESML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGKKNSR
        QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGKKNSR
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGKKNSR

XP_022976331.1 meiotic recombination protein SPO11-1 [Cucurbita maxima]1.6e-3466.18Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYDAKYLRIPQLHWLGAFASDS+TYNLPQQCLIPLTLE                        K  + AL       + C+L  R+  PH RLELESML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK
        QRGVKFEIEALSVHNISFLSEEYLPSKIESELT GK
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK

XP_023536168.1 meiotic recombination protein SPO11-1 [Cucurbita pepo subsp. pepo]1.3e-3667.14Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYDAKYLRIPQLHWLGAFASDS+TYNLPQQCLIPLTLE                        K  + AL       + C+L  R+  PH RLELESML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGKKNSR
        QRGVKFEIEALSVHNISFLSEEYLPSKIESELT GKKNSR
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGKKNSR

XP_031745979.1 meiotic recombination protein SPO11-1-like isoform X1 [Cucumis sativus]3.0e-3361.81Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLH-PHPHTHTTHTYHIGGKF-LSTALAFFY---------PCFMHCHLLQRKLD
        QMAYDAKYL+IPQL WLGAFASD   YNLP+QCLIPLT +G GS +Q H  H  TH THT      F +S  L   +              C+L  R+  
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLH-PHPHTHTTHTYHIGGKF-LSTALAFFY---------PCFMHCHLLQRKLD

Query:  PHLRLELESMLQRGVKFEIEALSVHNISFLSEEYLPSKIESELT
         H RLELESML+RGVKFEIEALSVHNISFLS+EYLPSKIESELT
Subjt:  PHLRLELESMLQRGVKFEIEALSVHNISFLSEEYLPSKIESELT

TrEMBL top hitse value%identityAlignment
A0A1S3CI64 meiotic recombination protein SPO11-1 isoform X23.1e-2858.09Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYDAK LRIPQL W+GAFASDS  Y+LP+QCLIPLT +                        K  + AL         C+L  R+  PH RLEL+SML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK
        QRGVKFEIEALSVHNISFLS+ YLPSKIESELT GK
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK

A0A1S3CJR6 meiotic recombination protein SPO11-1 isoform X13.1e-2858.09Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYDAK LRIPQL W+GAFASDS  Y+LP+QCLIPLT +                        K  + AL         C+L  R+  PH RLEL+SML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK
        QRGVKFEIEALSVHNISFLS+ YLPSKIESELT GK
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK

A0A1S4E3Z9 meiotic recombination protein SPO11-1 isoform X33.1e-2858.09Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYDAK LRIPQL W+GAFASDS  Y+LP+QCLIPLT +                        K  + AL         C+L  R+  PH RLEL+SML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK
        QRGVKFEIEALSVHNISFLS+ YLPSKIESELT GK
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK

A0A6J1F921 meiotic recombination protein SPO11-12.5e-3867.86Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLE +     L P                              C+L  R+  PH RLELESML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGKKNSR
        QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGKKNSR
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGKKNSR

A0A6J1IGM0 meiotic recombination protein SPO11-17.6e-3566.18Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYDAKYLRIPQLHWLGAFASDS+TYNLPQQCLIPLTLE                        K  + AL       + C+L  R+  PH RLELESML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK
        QRGVKFEIEALSVHNISFLSEEYLPSKIESELT GK
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGK

SwissProt top hitse value%identityAlignment
A2XFC1 DNA topoisomerase 6 subunit A31.3e-0728.79Show/hide
Query:  KQMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESM
        K M+YD+  L  P + WLG   SD + Y +P+QC +P+                  T H   +G + L                   K +     ELE+M
Subjt:  KQMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESM

Query:  LQRGVKFEIEALSVHNISFLSEEYLPSKIESE
        L+   K EI+ALS     +L+E YLP K++ +
Subjt:  LQRGVKFEIEALSVHNISFLSEEYLPSKIESE

Q0DSV9 Topoisomerase 6 subunit A31.3e-0728.79Show/hide
Query:  KQMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESM
        K M+YD+  L  P + WLG   SD + Y +P+QC +P+                  T H   +G + L                   K +     ELE+M
Subjt:  KQMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESM

Query:  LQRGVKFEIEALSVHNISFLSEEYLPSKIESE
        L+   K EI+ALS     +L+E YLP K++ +
Subjt:  LQRGVKFEIEALSVHNISFLSEEYLPSKIESE

Q5ZPV8 Meiotic recombination protein SPO11-11.6e-1841.09Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        Q+AYDA +LR+P + WLG F SD   Y LP  CL+                         H+  +    A      C++H      +  P  RLELE+ML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIE
        Q+GVKFEIEALS  +ISFLSEEY+P KI+
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIE

Q7Y021 Meiotic recombination protein SPO11-11.6e-1841.09Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        Q+AYDA +LR+P + WLG F SD   Y LP  CL+                         H+  +    A      C++H      +  P  RLELE+ML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIE
        Q+GVKFEIEALS  +ISFLSEEY+P KI+
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIE

Q9M4A2 Meiotic recombination protein SPO11-17.1e-2245.52Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYD + LR P + WLGAF SDS  Y++P+QCL+PLT E +                             A    C+     L+R++ P  RLELE+ML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTN
        +RGVKFEIEALSVH++SFLSE Y+PSKI  E+++
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTN

Arabidopsis top hitse value%identityAlignment
AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein5.1e-2345.52Show/hide
Query:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML
        QMAYD + LR P + WLGAF SDS  Y++P+QCL+PLT E +                             A    C+     L+R++ P  RLELE+ML
Subjt:  QMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESML

Query:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTN
        +RGVKFEIEALSVH++SFLSE Y+PSKI  E+++
Subjt:  QRGVKFEIEALSVHNISFLSEEYLPSKIESELTN

AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein2.3e-0728.03Show/hide
Query:  KQMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESM
        K M+YD+  L  P + WLG   SD + Y +P+QC +P+T +                          + T        F+       K +P    EL  M
Subjt:  KQMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLRLELESM

Query:  LQRGVKFEIEALSVHNISFLSEEYLPSKIESE
        ++   K EI+ALS     +LSE YLP K++ +
Subjt:  LQRGVKFEIEALSVHNISFLSEEYLPSKIESE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAACTTCAATCCCTGTTAGTGTTCTTGACCCTTTTCCTTTTCACAAGCAAATGGCCTACGATGCGAAGTATCTCAGAATCCCACAACTACACTGGCTTGGAGCTTT
TGCTTCAGATTCTAACACATACAATCTACCACAACAATGTCTCATCCCATTAACTTTGGAAGGTGAGGGATCTTACATACAACTACACCCGCACCCGCACACGCACACAA
CACACACGTACCACATTGGAGGTAAATTTCTATCAACAGCTCTAGCTTTCTTTTATCCTTGTTTCATGCATTGCCATCTTCTACAAAGAAAACTTGATCCCCACCTTAGG
TTGGAATTGGAGTCAATGCTGCAAAGAGGGGTGAAATTTGAGATAGAAGCACTGTCTGTACACAATATTTCCTTTTTGTCAGAGGAGTATTTACCATCCAAAATAGAAAG
TGAACTAACAAATGGTAAAAAAAATTCTAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAACTTCAATCCCTGTTAGTGTTCTTGACCCTTTTCCTTTTCACAAGCAAATGGCCTACGATGCGAAGTATCTCAGAATCCCACAACTACACTGGCTTGGAGCTTT
TGCTTCAGATTCTAACACATACAATCTACCACAACAATGTCTCATCCCATTAACTTTGGAAGGTGAGGGATCTTACATACAACTACACCCGCACCCGCACACGCACACAA
CACACACGTACCACATTGGAGGTAAATTTCTATCAACAGCTCTAGCTTTCTTTTATCCTTGTTTCATGCATTGCCATCTTCTACAAAGAAAACTTGATCCCCACCTTAGG
TTGGAATTGGAGTCAATGCTGCAAAGAGGGGTGAAATTTGAGATAGAAGCACTGTCTGTACACAATATTTCCTTTTTGTCAGAGGAGTATTTACCATCCAAAATAGAAAG
TGAACTAACAAATGGTAAAAAAAATTCTAGGTGA
Protein sequenceShow/hide protein sequence
MITSIPVSVLDPFPFHKQMAYDAKYLRIPQLHWLGAFASDSNTYNLPQQCLIPLTLEGEGSYIQLHPHPHTHTTHTYHIGGKFLSTALAFFYPCFMHCHLLQRKLDPHLR
LELESMLQRGVKFEIEALSVHNISFLSEEYLPSKIESELTNGKKNSR