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CmoCh09G010090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G010090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPre-mRNA-splicing factor like
Genome locationCmo_Chr09:5359833..5365767
RNA-Seq ExpressionCmoCh09G010090
SyntenyCmoCh09G010090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592094.1 hypothetical protein SDJN03_14440, partial [Cucurbita argyrosperma subsp. sororia]2.3e-7999.34Show/hide
Query:  RPEATEIHARRYSMDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQK
        RPEATEIHARRYSMDPSSVHKAPP+EEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQK
Subjt:  RPEATEIHARRYSMDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQK

Query:  LKEADRRTTTGRENKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        LKEADRRTTTGRENKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  LKEADRRTTTGRENKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

XP_022936022.1 uncharacterized protein LOC111442743 [Cucurbita moschata]1.7e-71100Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

XP_022975858.1 uncharacterized protein LOC111476432 [Cucurbita maxima]1.5e-7098.56Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSP+VEIQ+PPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

XP_023536283.1 uncharacterized protein LOC111797504 [Cucurbita pepo subsp. pepo]5.6e-7097.84Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSP+VEIQ+PPPKVKEEMTIYLGPHGAPPSQSKQDL+PANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

XP_038898121.1 uncharacterized protein LOC120085905 [Benincasa hispida]1.3e-6391.37Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHK PPVEEDEWDTDGFVIPSLGI  EET+QTK  SP+VEIQ+PPPKVKEE TIYLGPHGAPPSQSKQDLNP NRK RLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNM KGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

TrEMBL top hitse value%identityAlignment
A0A0A0K8B7 Uncharacterized protein2.1e-6289.21Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSV KAPP EEDEWDTDGFVIPSLGI  EE DQT+V SP+VEI++PPPKVKEE TIYLGPHGAPPSQSKQDLNP NRK RLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNM KGSSRDWLDPHCHEA+FEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

A0A1S3CJS1 uncharacterized protein LOC1035012432.3e-6188.49Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSV KAPP EEDEWDTDGFVIPSLGI  EETDQT+V SP+VEI++PPPKVKEE TIYLGPHGAPPSQSKQDLNP NRK RLK KLKEADRRTT GRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVG GKSSTNMTKGSSRDWLDPHCHEA+FEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

A0A6J1CE06 uncharacterized protein LOC1110103854.6e-6290.65Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSV K PPVEEDEWDTDGFVIPSLGI  EETDQTKV SPEVEI +PPPK KEE TIYLGPHGAPPSQSKQDLN  NRK RLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNM KGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

A0A6J1F787 uncharacterized protein LOC1114427438.4e-72100Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

A0A6J1IKG2 uncharacterized protein LOC1114764327.1e-7198.56Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSP+VEIQ+PPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G55640.1 unknown protein6.9e-3462.04Show/hide
Query:  PPVEE-DEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDP-PPKVKEEMTIYLGPHGAPPSQSKQ-DLNPANRKHRLKQKLKEADRRTT-TGRENKLEN
        P VE+ DEWDTDGFVIPSL IEE++ +    S  EVE   P  PK K E  IYLGPHGAPPSQ +    N ++RK R KQ LKEAD++ + +GRENK+ N
Subjt:  PPVEE-DEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDP-PPKVKEEMTIYLGPHGAPPSQSKQ-DLNPANRKHRLKQKLKEADRRTT-TGRENKLEN

Query:  LRELVGGG---KSSTNMTKGSSRDWLDPHCHEAQFEK
        LRELVGGG   +  TNM KG SRDWLDPHCHE+QFEK
Subjt:  LRELVGGG---KSSTNMTKGSSRDWLDPHCHEAQFEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAACTGATGTTCTTAGATGTAATGGCTAAACTATTGCTGAAGTCCCGCCCTGAGGCCACTGAAATCCATGCTCGTCGGTATTCAATGGACCCGTCGTCTGTGCA
CAAAGCTCCTCCAGTTGAAGAAGATGAGTGGGACACTGATGGGTTCGTGATTCCCAGCTTGGGGATAGAAGAAGAAGAGACAGACCAAACTAAAGTTAGCTCTCCAGAAG
TAGAGATCCAAGACCCTCCTCCAAAGGTTAAAGAAGAGATGACGATCTATCTTGGCCCACATGGCGCGCCACCATCACAGTCAAAACAAGATTTGAACCCCGCCAATCGT
AAACATAGGTTAAAGCAAAAATTGAAGGAAGCAGATCGGAGGACCACGACGGGACGGGAGAATAAGTTGGAGAATTTGAGAGAGCTTGTAGGTGGTGGAAAATCAAGCAC
CAATATGACAAAAGGTTCTTCAAGGGACTGGCTTGACCCACATTGCCATGAGGCTCAGTTTGAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAACTGATGTTCTTAGATGTAATGGCTAAACTATTGCTGAAGTCCCGCCCTGAGGCCACTGAAATCCATGCTCGTCGGTATTCAATGGACCCGTCGTCTGTGCA
CAAAGCTCCTCCAGTTGAAGAAGATGAGTGGGACACTGATGGGTTCGTGATTCCCAGCTTGGGGATAGAAGAAGAAGAGACAGACCAAACTAAAGTTAGCTCTCCAGAAG
TAGAGATCCAAGACCCTCCTCCAAAGGTTAAAGAAGAGATGACGATCTATCTTGGCCCACATGGCGCGCCACCATCACAGTCAAAACAAGATTTGAACCCCGCCAATCGT
AAACATAGGTTAAAGCAAAAATTGAAGGAAGCAGATCGGAGGACCACGACGGGACGGGAGAATAAGTTGGAGAATTTGAGAGAGCTTGTAGGTGGTGGAAAATCAAGCAC
CAATATGACAAAAGGTTCTTCAAGGGACTGGCTTGACCCACATTGCCATGAGGCTCAGTTTGAGAAGTAATGCCCACAGAGATCAACTTAACAAAATTAGCATAGTTTTC
AAGATAAAGATCTGATGGGTCGATTTGTCACGGTATTAAACGTCCTTTCGAGACAAATAATACCTTCTCTCTATATTTTTGAAAACTTGATGCCCAGAGTTTAGAACTAT
AATAAGTTTTGTATTGGAGCTTCAATGGTATAATTCAAGTAGTTGCTGTAAAAGCAGCATGTTTGGTGAAGCTAA
Protein sequenceShow/hide protein sequence
MMKLMFLDVMAKLLLKSRPEATEIHARRYSMDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANR
KHRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK