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CmoCh09G010410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G010410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description2'-5' RNA ligase
Genome locationCmo_Chr09:5583430..5586667
RNA-Seq ExpressionCmoCh09G010410
SyntenyCmoCh09G010410
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER45943.1 2'-5' RNA ligase [Striga asiatica]4.5e-0950Show/hide
Query:  LQSCENMLWKTGDREARIARCALTLPSDALIMISVWMLSFNIRPNEIRALEFDRCCVNPSAQMEEGKEKEITWMSQSL
        L+S ENML  TG+R AR AR A T PS+ALI +SVWM S ++RP  +RA+  D  CV P  Q+E G E  +  M   L
Subjt:  LQSCENMLWKTGDREARIARCALTLPSDALIMISVWMLSFNIRPNEIRALEFDRCCVNPSAQMEEGKEKEITWMSQSL
KAG7037301.1 hypothetical protein SDJN02_00926, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-2278.75Show/hide
Query:  WVQEARFSILHWARRDVVSTLYAESLILANARAAVISLMQPKIPSRMCSPDFPSGTQHAKMLSMLYAIVLEA--FGLEAW
        +VQEARFSILH ARRDVVSTLYAESLILANARAAVIS MQPK+PSR CSPDFPS TQHAKML +LY I +E   FG   W
Subjt:  WVQEARFSILHWARRDVVSTLYAESLILANARAAVISLMQPKIPSRMCSPDFPSGTQHAKMLSMLYAIVLEA--FGLEAW
NP_001322058.1 hypothetical protein AT1G55755 [Arabidopsis thaliana]2.0e-0465.12Show/hide
Query:  IEFISDVEYLAKLHKILHAAGLQ--SCENMLWKTGDREARIAR
        +E +SD++Y AKLHKI HAA LQ  SC+NML KTG+R AR AR
Subjt:  IEFISDVEYLAKLHKILHAAGLQ--SCENMLWKTGDREARIAR
TrEMBL top hitse value%identityAlignment
A0A0A0K596 Uncharacterized protein2.1e-0776.74Show/hide
Query:  MQPKIPSRMCSPDFPSGTQHAKMLSMLYAIVLEA-FGLEAWSL
        MQPKIPSR CSPDFPSG QHAK+L MLYAI +E  FGL AW L
Subjt:  MQPKIPSRMCSPDFPSGTQHAKMLSMLYAIVLEA-FGLEAWSL
A0A1P8ASY8 Uncharacterized protein9.5e-0565.12Show/hide
Query:  IEFISDVEYLAKLHKILHAAGLQ--SCENMLWKTGDREARIAR
        +E +SD++Y AKLHKI HAA LQ  SC+NML KTG+R AR AR
Subjt:  IEFISDVEYLAKLHKILHAAGLQ--SCENMLWKTGDREARIAR
A0A5A7QKP2 2'-5' RNA ligase2.2e-0950Show/hide
Query:  LQSCENMLWKTGDREARIARCALTLPSDALIMISVWMLSFNIRPNEIRALEFDRCCVNPSAQMEEGKEKEITWMSQSL
        L+S ENML  TG+R AR AR A T PS+ALI +SVWM S ++RP  +RA+  D  CV P  Q+E G E  +  M   L
Subjt:  LQSCENMLWKTGDREARIARCALTLPSDALIMISVWMLSFNIRPNEIRALEFDRCCVNPSAQMEEGKEKEITWMSQSL
A0A654EK96 Uncharacterized protein9.5e-0565.12Show/hide
Query:  IEFISDVEYLAKLHKILHAAGLQ--SCENMLWKTGDREARIAR
        +E +SD++Y AKLHKI HAA LQ  SC+NML KTG+R AR AR
Subjt:  IEFISDVEYLAKLHKILHAAGLQ--SCENMLWKTGDREARIAR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCTTGTTCAGAGCGATTCTTCCCAATTTTGGTTGATTTGGTCAATGTTTTCAAGGTTGGTAAGAAAGACATTGAATTCATCTCGGATGTCGAGTATCTTGCCAA
ACTTCACAAGATACTCCATGCAGCTGGTCTTCAGTCATGTGAAAACATGCTGTGGAAAACAGGTGATCGTGAAGCAAGAATAGCACGGTGTGCTCTAACACTTCCATCAG
ATGCATTAATTATGATATCGGTGTGGATGCTTTCCTTCAACATTCGACCCAATGAAATAAGAGCTCTTGAATTCGATCGTTGTTGTGTCAATCCATCCGCCCAGATGGAG
GAAGGAAAGGAGAAGGAAATTACCTGGATGAGTCAAAGCCTTCCGATCTCCTACAGAGGAAACCACTCGGATGATGAAAGATACAATCGGGGGATTGGCCCTTGTTACGC
TCGTTATCTCTGGGTGCAGGAAGCTAGATTTTCGATCCTCCATTGGGCAAGACGGGATGTGGTTTCTACCCTGTATGCTGAGTCACTCATCCTGGCGAACGCGAGGGCTG
CTGTGATTTCATTGATGCAGCCGAAGATACCGTCTAGGATGTGCTCTCCGGACTTTCCCAGTGGTACCCAGCACGCCAAGATGTTGTCGATGCTTTACGCCATTGTTCTT
GAAGCATTTGGCTTGGAGGCGTGGTCTTTGCTCCTTCAAAGCAAAGTATCTACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACTCTTGTTCAGAGCGATTCTTCCCAATTTTGGTTGATTTGGTCAATGTTTTCAAGGTTGGTAAGAAAGACATTGAATTCATCTCGGATGTCGAGTATCTTGCCAA
ACTTCACAAGATACTCCATGCAGCTGGTCTTCAGTCATGTGAAAACATGCTGTGGAAAACAGGTGATCGTGAAGCAAGAATAGCACGGTGTGCTCTAACACTTCCATCAG
ATGCATTAATTATGATATCGGTGTGGATGCTTTCCTTCAACATTCGACCCAATGAAATAAGAGCTCTTGAATTCGATCGTTGTTGTGTCAATCCATCCGCCCAGATGGAG
GAAGGAAAGGAGAAGGAAATTACCTGGATGAGTCAAAGCCTTCCGATCTCCTACAGAGGAAACCACTCGGATGATGAAAGATACAATCGGGGGATTGGCCCTTGTTACGC
TCGTTATCTCTGGGTGCAGGAAGCTAGATTTTCGATCCTCCATTGGGCAAGACGGGATGTGGTTTCTACCCTGTATGCTGAGTCACTCATCCTGGCGAACGCGAGGGCTG
CTGTGATTTCATTGATGCAGCCGAAGATACCGTCTAGGATGTGCTCTCCGGACTTTCCCAGTGGTACCCAGCACGCCAAGATGTTGTCGATGCTTTACGCCATTGTTCTT
GAAGCATTTGGCTTGGAGGCGTGGTCTTTGCTCCTTCAAAGCAAAGTATCTACTTAA
Protein sequenceShow/hide protein sequence
MDSCSERFFPILVDLVNVFKVGKKDIEFISDVEYLAKLHKILHAAGLQSCENMLWKTGDREARIARCALTLPSDALIMISVWMLSFNIRPNEIRALEFDRCCVNPSAQME
EGKEKEITWMSQSLPISYRGNHSDDERYNRGIGPCYARYLWVQEARFSILHWARRDVVSTLYAESLILANARAAVISLMQPKIPSRMCSPDFPSGTQHAKMLSMLYAIVL
EAFGLEAWSLLLQSKVST