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CmoCh09G011040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G011040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPHD domain-containing protein
Genome locationCmo_Chr09:6186937..6191057
RNA-Seq ExpressionCmoCh09G011040
SyntenyCmoCh09G011040
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592183.1 hypothetical protein SDJN03_14529, partial [Cucurbita argyrosperma subsp. sororia]5.2e-6390.98Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG
        C    +H YCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMK  ANDDKNQSS PLQLPD HC G+NDTAPGGPGELVREG
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG

Query:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
Subjt:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

XP_022937265.1 uncharacterized protein LOC111443603 [Cucurbita moschata]1.0e-6695.49Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG
        C    +H YCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG

Query:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
Subjt:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

XP_022975627.1 uncharacterized protein LOC111475358 [Cucurbita maxima]2.7e-6491.73Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG
        C    +H YCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKL+KRLKKKWKAMMKRKANDD NQS HPLQLPD HCSGENDTAPGGPGELVREG
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG

Query:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        GTNHDEVA SSDTSDFLRHNCYVAQPIVDPVWR
Subjt:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

XP_023536446.1 uncharacterized protein LOC111797622 [Cucurbita pepo subsp. pepo]6.1e-6492.48Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG
        C    +H YCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKR ANDDKNQSS PLQLPD HCSGENDTAPGGPGELVREG
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG

Query:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        GTNHDEVAASSDTSDFL HNCYVAQPIVDPVWR
Subjt:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

XP_038899416.1 uncharacterized protein LOC120086715 isoform X2 [Benincasa hispida]4.9e-3762.77Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRL---KKKWKAMMKRKANDDKNQSSHPLQLPDTHCS-GENDTAPGGPGEL
        C    +H YCLD LP++FDEYVTW CEDCEAT+ P V SKV+LK++KL+KRL   KKK K   K K NDD  Q S+PLQLP+ HCS  +NDT PGGPGE 
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRL---KKKWKAMMKRKANDDKNQSSHPLQLPDTHCS-GENDTAPGGPGEL

Query:  VREGGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        V EGG +H +VA SSD  + +RH+ YVAQPIVDPVWR
Subjt:  VREGGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

TrEMBL top hitse value%identityAlignment
A0A1S3CFQ5 uncharacterized protein LOC103500424 isoform X19.6e-3156.72Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCS-GENDTAPGGPGELVRE
        C    +H YCLD+LPK  DEYV W CEDCEA + P + SKVKLK+KK +KRLKK      K K ND  +QSS+PLQLP+  CS  +N++ PG  GE V E
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCS-GENDTAPGGPGELVRE

Query:  GGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        GG N  +V  SSD  +  R NCYVAQPIVDP+WR
Subjt:  GGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

A0A6J1FG38 uncharacterized protein LOC1114436034.9e-6795.49Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG
        C    +H YCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG

Query:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
Subjt:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

A0A6J1IER8 uncharacterized protein LOC1114753581.3e-6491.73Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG
        C    +H YCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKL+KRLKKKWKAMMKRKANDD NQS HPLQLPD HCSGENDTAPGGPGELVREG
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCSGENDTAPGGPGELVREG

Query:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        GTNHDEVA SSDTSDFLRHNCYVAQPIVDPVWR
Subjt:  GTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

A0A6J1IWW2 uncharacterized protein LOC111480637 isoform X21.9e-3158.21Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCS-GENDTAPGGPGELVRE
        C    +H YCLD LPKTFDEYVTWFCEDCEA + P VKS VKLK KK +++ KK          ND           P+ HCS  +NDT PGG GE VRE
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCS-GENDTAPGGPGELVRE

Query:  GGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        GG NH EV  SSD S+FL HNCYVA+PIVDP+WR
Subjt:  GGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

A0A6J1J269 uncharacterized protein LOC111480637 isoform X11.9e-3158.21Show/hide
Query:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCS-GENDTAPGGPGELVRE
        C    +H YCLD LPKTFDEYVTWFCEDCEA + P VKS VKLK KK +++ KK          ND           P+ HCS  +NDT PGG GE VRE
Subjt:  CSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQSSHPLQLPDTHCS-GENDTAPGGPGELVRE

Query:  GGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR
        GG NH EV  SSD S+FL HNCYVA+PIVDP+WR
Subjt:  GGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCGAATGAGGATCAATTTTCAAGTGAAGTAATTGGTTACCTTTCGAGAAACAATGTTCTCGTTGCTTCCATGGTCAATGAATATGTTGCAAACCTTCCTATTAA
CGGTGCATCTTGTTCTAAAGAGGGCATGCACTTCTATTGCTTGGATAAATTGCCAAAAACTTTTGATGAGTATGTTACTTGGTTTTGTGAAGATTGTGAGGCAACAGTGG
CGCCAATAGTAAAATCTAAAGTTAAATTAAAAGAGAAAAAGCTTATCAAACGACTGAAGAAGAAATGGAAGGCAATGATGAAAAGGAAGGCGAACGATGATAAAAATCAA
AGTAGTCATCCTCTTCAACTTCCCGACACACATTGCAGCGGAGAGAATGATACAGCACCTGGAGGGCCGGGAGAGCTAGTTCGTGAAGGTGGAACCAATCATGATGAAGT
CGCTGCATCGTCTGATACATCTGATTTCTTAAGGCACAACTGTTATGTTGCACAACCTATAGTCGATCCGGTTTGGAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGATCGAATGAGGATCAATTTTCAAGTGAAGTAATTGGTTACCTTTCGAGAAACAATGTTCTCGTTGCTTCCATGGTCAATGAATATGTTGCAAACCTTCCTATTAA
CGGTGCATCTTGTTCTAAAGAGGGCATGCACTTCTATTGCTTGGATAAATTGCCAAAAACTTTTGATGAGTATGTTACTTGGTTTTGTGAAGATTGTGAGGCAACAGTGG
CGCCAATAGTAAAATCTAAAGTTAAATTAAAAGAGAAAAAGCTTATCAAACGACTGAAGAAGAAATGGAAGGCAATGATGAAAAGGAAGGCGAACGATGATAAAAATCAA
AGTAGTCATCCTCTTCAACTTCCCGACACACATTGCAGCGGAGAGAATGATACAGCACCTGGAGGGCCGGGAGAGCTAGTTCGTGAAGGTGGAACCAATCATGATGAAGT
CGCTGCATCGTCTGATACATCTGATTTCTTAAGGCACAACTGTTATGTTGCACAACCTATAGTCGATCCGGTTTGGAGGTAAGAGCTTTTTGTTTATGTTTAATTTTATT
TCAAATTAGCCGGTGATTGATATTGGGGCAGTGTGCCGGTTCTTGAGATCATAGATGGGGTCTTCCCGTTACAAATGAAGTACAATTCTTATTTTGGTCGTGACAGGGGA
ACTTTAGAAGTTTGGAACCAAAGTTTTGGTGGAGTTTGTGTACTTGTTGCTCATATGTCTAGCTTAGCATGCTCGAAAGTGTATGAGGAGGCAAAAATATTACCCGAGTT
ACTTTCCGTTGAAATACTTCGTAGATCCGATATATGGCCGAAAGGGTTCGAGAAATTGGGGCCAACTGATCAAAGTATTGCTCTTTATTTCTTTGCAGAAGGGGAAAGAA
GCCAAAAGGCGTTTGATCTTCTCATCAATTCAATGATGAGCCAGGACCTAGCCATGAAGACTGTGTTGAAGAATGCAGAGCTATTAGTTTTTACTTCGTCCGTGTTACCG
ATGCGATATTGGAGATTTCAGACGAAGTACTATTTGTGGGGCGTCTTTCGTGCGAAGCGAGCTGCACAACCGAGAAAGAATGTGGCTTCTGAGGAGAGAACTTTTACTGA
GTCATCACCTTGTATACAAAGCCCTATAAGTCCTACAAGCCCTTTAAGCAACACCAGTGTTCTTCATTCTGGGTCGCTTCGTTCTTGCTCGCCTCTACCATGACTTACTG
GTTAACCAAAATGAGTCTGGCTGTAGATTCAAACTCAGACATTACTCTCAGGACCGACAAAATTCCGACCAAAAGATGCAGCTGAAGAATTCAGACTTGAGGTTGGGAAT
GGTGAGAGCTTGAAAGAGGATCAGTAGATGATGAATCTGTCTTGTCGACGATAACGGTCGTTCGGAGCTTCAATGCCATATGCTAAGGGGGAGAGGAGCGGCTGAACAGT
TCTCCTTTAAACCAAAGTCCACATTAAGTTAAGGGAAGTGCCTCCCTTTACCAGACTTTTGCAGTTTTTTGATGATTTTGTGGGGGATGGCTTTCGTGTTGTGGCTTTAT
TCTTACCTATTTGTTGTGAATCTCTATTAACATAATGTGTGTGAAGCCTGGTCAGGGTTGTTGGTGAGTTAGCTGAGGGTTGGTTCCAAAGTGGAAGGTTATGGTTCTTG
TAGTTATACATTTTATTTAGGTTAATGGCTATTCTTATTGGGACAATAAAGTCGTTCCAACACGTGAGGTTGAAGATTCAAACTTCTAAGTTGTCGAGGTTATATGTTGC
ATTGTTGTGGCAAGCTATTTTGTGGACGGTTTTGCTTGCTACATAGAGTATGATTGGCTCTTCTGCAGGTAGATTTTAACGTGTTAGATTTGTATTAGGTGATAAGCTCC
TTCCC
Protein sequenceShow/hide protein sequence
MGSNEDQFSSEVIGYLSRNNVLVASMVNEYVANLPINGASCSKEGMHFYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRKANDDKNQ
SSHPLQLPDTHCSGENDTAPGGPGELVREGGTNHDEVAASSDTSDFLRHNCYVAQPIVDPVWR