CuGenDBv2

Gene ID	CmoCh09G011230
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Genome location	Cmo_Chr09:6408724..6409590
RNA-Seq Expression	CmoCh09G011230
Synteny	CmoCh09G011230
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

1.2e-91

62.33

Show/hide

Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE+M R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK + +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]

5.2e-92

62.67

Show/hide

Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+  L K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE+M R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK   +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]

8.8e-92

62.33

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Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE++ R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK + +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAPT      ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

1.2e-91

62.33

Show/hide

Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE+M R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK + +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]

2.3e-92

62.67

Show/hide

Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+  L K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE+M R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK + +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T3M3 Reverse transcriptase

2.5e-92

62.67

Show/hide

Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+  L K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE+M R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK   +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

A0A5A7UIP7 Reverse transcriptase

4.3e-92

62.33

Show/hide

Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE++ R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK + +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAPT      ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

A0A5D3BRZ6 Reverse transcriptase

5.6e-92

62.33

Show/hide

Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE+M R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK + +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

A0A5D3BYE6 Reverse transcriptase

1.1e-92

62.67

Show/hide

Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+  L K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE+M R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK + +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

A0A5D3C4R1 Reverse transcriptase

5.6e-92

62.33

Show/hide

Query:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE
        MSS+    K+  DRLVE+EEQM YL EVPDSIR+L+ R++E+++KT  +DA+ GR++  PIQE+M R++ LE  TT N G    +ERGDSSTGS   IEE
Subjt:  MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGG----FERGDSSTGSAGLIEE

Query:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE
        RV  LDSSQK + +M+  +SED +A LDVVR E+AD++AR+++ +R + NQAP       ++VK+PEPKPF  ARDAKALENYIFDLEQYF+A +T  +E
Subjt:  RVDGLDSSQKAMFQMVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKE

Query:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF
         K+T+ATMHL+EDAKLWWRS++VDIQEG+CTIDTW+ LK+EL+SQFF  NVEI+ARRKL +LKHT SIREYVKQF+ LMLDIR MSE DK+F
Subjt:  EKITVATMHLAEDAKLWWRSKYVDIQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTCGACTAAACAGCTGAACAAGTCCCATGTCGACAGATTAGTCGAAATAGAAGAACAAATGCAATACTTACGGGAAGTCCCTGACAGTATTCGATTCCTAGATGA
GCGAGTGAAAGAACTTGCTGACAAGACCCTCGCCGTTGACGCAATAAAGGGTCGGCTGGATGAGTTACCCATTCAAGAAATAATGTACCGAATGGAAAACCTAGAAATAA
AAACCACAAAGAATGGTGGTTTTGAGCGAGGAGACAGCTCGACAGGCTCTGCTGGCCTGATTGAGGAGCGAGTCGATGGACTAGACAGCTCCCAAAAAGCGATGTTTCAG
ATGGTCACTGAACTATCTGAAGATGTGAAAGCAGCCCTTGACGTAGTCAGGGTAGAAATGGCGGACATAAGCGCTAGAGTAAACGTTGCCGTAAGGGTGGTGGAGAACCA
AGCCCCTACCTGGAGCACAACGCGACCCAACAAGGTCAAACTTCCTGAACCCAAGCCCTTCTCCAGGGCTCGGGACGCCAAGGCCTTAGAGAACTACATCTTCGACCTTG
AGCAGTACTTTAAAGCTATTGACACTGAGATAAAGGAAGAAAAGATCACTGTGGCCACCATGCATTTGGCTGAGGATGCGAAACTGTGGTGGCGGTCAAAGTATGTGGAC
ATCCAAGAGGGCCAATGCACAATAGACACTTGGGAGAGACTAAAACAGGAGCTTCAGTCTCAATTCTTCCTAAGGAATGTGGAGATCATGGCCAGAAGGAAATTATGCGA
CCTTAAACATACGAGCAGCATTCGAGAATATGTCAAACAGTTCTCGTTACTCATGTTAGACATTCGACAGATGTCTGAGTTAGATAAGATCTTCTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSSTKQLNKSHVDRLVEIEEQMQYLREVPDSIRFLDERVKELADKTLAVDAIKGRLDELPIQEIMYRMENLEIKTTKNGGFERGDSSTGSAGLIEERVDGLDSSQKAMFQ
MVTELSEDVKAALDVVRVEMADISARVNVAVRVVENQAPTWSTTRPNKVKLPEPKPFSRARDAKALENYIFDLEQYFKAIDTEIKEEKITVATMHLAEDAKLWWRSKYVD
IQEGQCTIDTWERLKQELQSQFFLRNVEIMARRKLCDLKHTSSIREYVKQFSLLMLDIRQMSELDKIF

CmoCh09G011230 (gene) of Cucurbita moschata (Rifu) v1 genome