CuGenDBv2

Gene ID	CmoCh09G011910
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	keratin, type II cytoskeletal 3 isoform X1
Genome location	Cmo_Chr09:8738281..8745477
RNA-Seq Expression	CmoCh09G011910
Synteny	CmoCh09G011910
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022932819.1 keratin, type II cytoskeletal 2 epidermal isoform X1 [Cucurbita moschata]

7.1e-74

100

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

XP_022932820.1 keratin, type II cytoskeletal 2 epidermal isoform X2 [Cucurbita moschata]

4.3e-71

98.61

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GDLLNGRQSIFP +DEIGALVDELALNTKKLIRVTAQEIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

XP_022974025.1 keratin, type II cytoskeletal 3 isoform X1 [Cucurbita maxima]

1.1e-71

97.22

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GDLLNGRQSIFPHRDEIGA+VDELALNTKKLI+VTA+EIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

XP_023521208.1 ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo]

6.6e-72

97.92

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEG EDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GDLLNG QSIFPHRDEIGALVDELALNTKKLIRVTA+EIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

XP_023521209.1 fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo]

4.0e-69

96.53

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEG EDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GDLLNG QSIFP +DEIGALVDELALNTKKLIRVTA+EIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSM8 Uncharacterized protein

1.4e-64

86.11

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNG+R++ GEDE G+LW LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GD+L GRQSIFPH+D+IGALVD+L LNTK+LIR T++EIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

A0A6J1EY31 keratin, type II cytoskeletal 2 epidermal isoform X1

3.4e-74

100

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

A0A6J1F360 keratin, type II cytoskeletal 2 epidermal isoform X2

2.1e-71

98.61

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GDLLNGRQSIFP +DEIGALVDELALNTKKLIRVTAQEIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

A0A6J1IA95 keratin, type II cytoskeletal 3 isoform X2

3.3e-69

95.83

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GDLLNGRQSIFP +DEIGA+VDELALNTKKLI+VTA+EIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

A0A6J1ICW2 keratin, type II cytoskeletal 3 isoform X1

5.5e-72

97.22

Show/hide

Query:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
        MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV
Subjt:  MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNV

Query:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR
        GDLLNGRQSIFPHRDEIGA+VDELALNTKKLI+VTA+EIDKWKR
Subjt:  GDLLNGRQSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G66820.1 glycine-rich protein

3.6e-07

Show/hide

Query:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGAGRGIAQDD-KRRY
        +GP  G G+GCG G GIGL GG G G    GL      LGFG+G G G G G+G+G G G + DD K R+
Subjt:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGAGRGIAQDD-KRRY

AT4G10330.1 glycine-rich protein

9.3e-40

57.04

Show/hide

Query:  SRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGR
        +R   G+D+ G+LWKLP ++   IG++GPAFGLGVGCG GFG GL+GG GFGPG+PGLQ G G GAGCG+G+GFGYG GRG A D  R Y NVG      
Subjt:  SRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGR

Query:  QSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKW
            P  +E+ +L+DEL ++TKKL++ T  EIDKW
Subjt:  QSIFPHRDEIGALVDELALNTKKLIRVTAQEIDKW

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCTCGAAACATGAACGGAAGCAGACACGAAGGCGGAGAAGATGAGAGCGGAATGCTGTGGAAGCTTCCAGTTTTGAAATCTTCCAGAATCGGAAGGTTAGGTCCCGC
CTTCGGCCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTGCTGGATTTGGTCCAGGAATTCCTGGCCTACAACTTGGCTTTGGTCTTGGTGCTG
GATGTGGAGTTGGCTTAGGATTTGGCTATGGTGCGGGCAGGGGCATTGCGCAAGATGACAAACGGAGATACTCTAACGTTGGGGATCTGTTAAATGGTCGTCAAAGTATT
TTTCCTCATAGGGACGAGATCGGCGCGCTTGTGGACGAGCTCGCCCTCAATACAAAGAAGCTTATTCGAGTTACCGCACAGGAGATTGACAAGTGGAAAAGATGA

mRNA sequence

Show/hide mRNA sequence

AGAAAAAGATATCAGAAATGCCTCGAAACATGAACGGAAGCAGACACGAAGGCGGAGAAGATGAGAGCGGAATGCTGTGGAAGCTTCCAGTTTTGAAATCTTCCAGAATC
GGAAGGTTAGGTCCCGCCTTCGGCCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTGCTGGATTTGGTCCAGGAATTCCTGGCCTACAACTTGG
CTTTGGTCTTGGTGCTGGATGTGGAGTTGGCTTAGGATTTGGCTATGGTGCGGGCAGGGGCATTGCGCAAGATGACAAACGGAGATACTCTAACGTTGGGGATCTGTTAA
ATGGTCGTCAAAGTATTTTTCCTCATAGGGACGAGATCGGCGCGCTTGTGGACGAGCTCGCCCTCAATACAAAGAAGCTTATTCGAGTTACCGCACAGGAGATTGACAAG
TGGAAAAGATGAAGTTCTCTTCTTTTACATTAAGGTCCAATCCCCTTCCACCATCGTTAGTAAGATCCATAATCAAAAGCATGGAAGGAAAAACTACAAAAAAAAGAAAA
AAAAAAAAAAAAAAAAGAAAAAAAGAAGTAATCTAAAGTATGTTCAATGTTATTAAAGAACAGGCTGGTTTAAGTTGTGCATTCAACAATATAAGATCATTGGCAGTATT
TTAGTGATTATATTCTATAATTTCAACCTTTTGGCATCAACCATTTTGCTCGAAGCCTTAACTTTTAAAAATTAACTAGAGATTTTTATATGACTTGGGAAACCGGTTAC
CCTAAACTATCAAATCTAAATCATAAAAGTTTGGTCAGGTTAGATTTTTTTCGGTTTGGGATGGTCGAATTTTTAAAAAATCGAAAAATTTGGGTTGATGCGGGTTGACA
TTATTTTAGTCAACTCAACCAATTCGAAAATAGTGTTAAGAACATTTAATCCGGTCGATTAGTGGGTTGACATTATTTTAGTCAAGTTAACCCAACCAATTTGAAAATAG
TGTTAAGAATATTTAATCCACATCCAAAAAGAAGCGAGCTACATCTGAGTTTTTACGTCCCCATGTCCCTCTCGTGTGGCGACATGGGGGCGAAAAAAGGAAAGAGAGAG
GGATGGGGTTTTTTCTCACTTTTGGCATAGCGAGCCCCAGCGGGAGGCCCACACGACGAGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAATTGCGTCATTGTGCCT
GGGCTATGAGATCTCTCAGCCACATAGATAGTTCAATGTGCTTATCAGACCCTTAGATGTGGATCATCCAAAGCAATCATTGTAATCTAATTAATCTAATATGTATAACA
AGTACTAAAAAAAGAACCCGGG

Protein sequence

Show/hide protein sequence

MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSI
FPHRDEIGALVDELALNTKKLIRVTAQEIDKWKR

CmoCh09G011910 (gene) of Cucurbita moschata (Rifu) v1 genome