; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G012050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G012050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding protein 38 isoform X1
Genome locationCmo_Chr09:9125440..9132653
RNA-Seq ExpressionCmoCh09G012050
SyntenyCmoCh09G012050
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR037366 - BOULE/DAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592286.1 putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia]7.3e-15398.2Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKHEKKKWELT GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMY TGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG ++
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL

XP_022930178.1 RNA-binding protein 38 isoform X1 [Cucurbita moschata]1.6e-15598.92Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG ++
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL

XP_022930180.1 RNA-binding protein 38 isoform X2 [Cucurbita moschata]1.3e-154100Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS

XP_023535742.1 RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo]2.1e-15297.84Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKHEKKKWELT  GGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG ++
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL

XP_023535743.1 RNA-binding protein 38-like isoform X2 [Cucurbita pepo subsp. pepo]1.8e-15198.91Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKHEKKKWELT  GGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS

TrEMBL top hitse value%identityAlignment
A0A6J1EUB1 RNA-binding protein 38 isoform X17.6e-15698.92Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG ++
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL

A0A6J1EW94 RNA-binding protein 38 isoform X26.4e-155100Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS

A0A6J1IAD7 RNA-binding protein 24 isoform X32.0e-14896.04Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKH        GGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG ++
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL

A0A6J1ID09 RNA-binding protein 38 isoform X26.4e-155100Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS

A0A6J1IGG9 RNA-binding protein 38 isoform X17.6e-15698.92Show/hide
Query:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
        STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA
Subjt:  STPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAA

Query:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL
        AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSG ++
Subjt:  AAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL

SwissProt top hitse value%identityAlignment
Q62176 RNA-binding protein 383.9e-2458.51Show/hide
Query:  PSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQ
        PS M     DTT+TK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA RAC D  P+IDGR+AN NLA LG +
Subjt:  PSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQ

Q6GQD3 RNA-binding protein 24-A6.6e-2462.35Show/hide
Query:  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQ
        DTTYTK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA RAC D  P+IDGR+AN NLA LG +
Subjt:  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQ

Q6P8A7 RNA-binding protein 246.6e-2462.35Show/hide
Query:  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQ
        DTTYTK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA RAC D  P+IDGR+AN NLA LG +
Subjt:  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQ

Q9H0Z9 RNA-binding protein 388.7e-2455.67Show/hide
Query:  IMTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQ
        +  P  M     DTT+TK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA RAC D  P+IDGR+AN NLA LG +
Subjt:  IMTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQ

Q9M1S3 Probable RNA-binding protein ARP13.5e-2535.31Show/hide
Query:  TPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLG--VQRSK
        T +N+   FGDT  TKVFVGGLAW+T K+ M ++F ++GDILEAV+I+DK T RSKGYGFVTF++  AA RAC D+ P+I+GRRANCNLASLG  +++S 
Subjt:  TPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLG--VQRSK

Query:  PSTPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGA
          T   +  K     G       V +  Q  +     +  H          HQ +P+  YGY S    Y  P   +N   G      M G          
Subjt:  PSTPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGA

Query:  AAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSL--PPTPPTLPSGSSLRSRLI
        +     +Y +  +    GGG       S    +   YP+H         S    FPQ   + P+S   PP   T+  G S++ + I
Subjt:  AAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSL--PPTPPTLPSGSSLRSRLI

Arabidopsis top hitse value%identityAlignment
AT1G22910.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-5954.15Show/hide
Query:  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW
        GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA  ACVDA PVIDGRRANCNLASLG+QRSKPSTP H     
Subjt:  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW

Query:  ELTGGGGGR--NFRV-LSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAA
            GGGGR  N RV +S+ QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY +YG     GG L+ AAA+A
Subjt:  ELTGGGGGR--NFRV-LSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAA

Query:  AAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSL-------PPTPPTLP
          FYP        GGG  G      Q  Y     HHL  Y+          P HY+ P  S+       P  PP +P
Subjt:  AAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSL-------PPTPPTLP

AT1G22910.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-5957.83Show/hide
Query:  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW
        GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA  ACVDA PVIDGRRANCNLASLG+QRSKPSTP H     
Subjt:  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW

Query:  ELTGGGGGR--NFRV-LSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAA
            GGGGR  N RV +S+ QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY +YG     GG L+ AAA+A
Subjt:  ELTGGGGGR--NFRV-LSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAA

Query:  AAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPT
          FYP        GGG  G      Q  Y     HHL  Y+    S PT
Subjt:  AAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPT

AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein5.0e-5955.19Show/hide
Query:  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW
        GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA  ACVDA PVIDGRRANCNLASLG+QRSKPSTP H     
Subjt:  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW

Query:  ELTGGGGGR--NFRV-LSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAA
            GGGGR  N RV +S+ QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY +YG     GG L+ AAA+A
Subjt:  ELTGGGGGR--NFRV-LSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAA

Query:  AAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLP
          FYP        GGG  G      Q  Y     HHL  Y+    S PT   Q  +   +S   T  +LP
Subjt:  AAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLP

AT1G33470.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-6757.14Show/hide
Query:  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE
        DTT+TKVFVGGLAWET K +++NYFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H      
Subjt:  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE

Query:  LTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPY-NLYGYSSYSPDYAYPT-SYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPY
          G  GGR  +V S F+T F G   +A  S   F HY     +PY N +G+SSYS DY YPT SYYNVYGGATAQ+PMYG+GP  +   AAA AA FYPY
Subjt:  LTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPY-NLYGYSSYSPDYAYPT-SYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPY

Query:  FQFGEGSGGGANGFTGGSGQQGYG-VQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
         QF EG+G             GY  + YP+H+  YSA   + P     H+   P+SL P+ P +PS
Subjt:  FQFGEGSGGGANGFTGGSGQQGYG-VQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS

AT1G33470.2 RNA-binding (RRM/RBD/RNP motifs) family protein7.0e-6957.36Show/hide
Query:  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE
        DTT+TKVFVGGLAWET K +++NYFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H      
Subjt:  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE

Query:  LTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPY-NLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYF
          G  GGR  +V S F+T F G   +A  S   F HY     +PY N +G+SSYS DY YPTSYYNVYGGATAQ+PMYG+GP  +   AAA AA FYPY 
Subjt:  LTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPY-NLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYF

Query:  QFGEGSGGGANGFTGGSGQQGYG-VQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS
        QF EG+G             GY  + YP+H+  YSA   + P     H+   P+SL P+ P +PS
Subjt:  QFGEGSGGGANGFTGGSGQQGYG-VQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACTATTAGTGGGCTTAGACCATTACAAATGGTATCAGAGATAGATACCAAGCGATGTGTCAGCGAGGAGGTTGAGTTCCGAAGAGGGTGGACACGAGATCAAAC
AACTTTTGTTTTGAAAATCAAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACTTACA
CCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCC
ACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAA
TCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAGCACGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCT
CTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCT
TCGTACTCGCCCGACTACGCTTACCCTACGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGC
AGCGGCGGCCGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGT
ACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTG
CCATCAGGTTCGTCTCTCCGCTCTCGTCTCATTCGATTATGTTTTTCGCTATTCCACAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAAACGTCCTCAA
ATTTCCTCCGAAACGAAAAATCGCAAGCCCTAACCATGGTTCCATCTCTTTCTCTCTTCACTCTTTTGCCCAATGGTCAGCCCTCCGTCGGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACTATTAGTGGGCTTAGACCATTACAAATGGTATCAGAGATAGATACCAAGCGATGTGTCAGCGAGGAGGTTGAGTTCCGAAGAGGGTGGACACGAGATCAAAC
AACTTTTGTTTTGAAAATCAAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACTTACA
CCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCC
ACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAA
TCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAGCACGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCT
CTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCT
TCGTACTCGCCCGACTACGCTTACCCTACGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGC
AGCGGCGGCCGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGT
ACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTG
CCATCAGGTTCGTCTCTCCGCTCTCGTCTCATTCGATTATGTTTTTCGCTATTCCACAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAAACGTCCTCAA
ATTTCCTCCGAAACGAAAAATCGCAAGCCCTAACCATGGTTCCATCTCTTTCTCTCTTCACTCTTTTGCCCAATGGTCAGCCCTCCGTCGGGGTTGAGCCAACCAACCAT
AGCTAACCTCACCAAAATCATGCATTATTTTTTTTTTTATCAAAAGTGGTTCTTAGGCCATGAAGGGACTTGGCCCTAAGTTGGCTAATTATGCACATAGCTACCTTTTA
ATCTTTGATAGCCTAAGGAAGGCTACAAGGATAGACCAAAAAAAACATTTTTCCAAAGGAAAAAAAAAACCCATTTCAAAAAGCTAATATTTTTCTCATTATTGTAATTA
AATTTCAATTAGGAGTAATCACAACATGCTGCTTCTGTGAAGATCAGTGAATAGCTCCTGAACTCATCAGGATTAGCGATAGGGTTAAGAATATGTAGCGTTTTTGTTGC
TATTATTACAAATTAATTAACTTGGTCTAATCAACCAACCCATTTCAAAATATTCCCCATGGGTTTGGGGAATGGTAATGAAACCCTTTTATTAATCAACTCTTAAGCAC
ATTATTAGTTATTTCTTGTAATTAAACTTCACAAACAATGGTGGCTCAACTTATGGGAGTTATAGCCATGTTTATTTTTGGTAAAGGTTTTGCATTTAGGTCCCATAATT
AGGAGTTAATTAGGATAGGATTAAGCATTCCATGATTTTGAGACTCCATTAATGGATATTGGAGGTCTCAAAATAAGCATTTTGCATGTGAGCCCTTGGGAGATATTTGG
GTTCCCTTTGGCTTGTTCTTTCACTAACCCTAAACCAACCATGGTTAGGACTTAGGTCAACTTCATTTCTGTCTTCAATATTCCCATTTTACCCTCCTCTCTATCATCCA
TCCCAATCACCAATGTGTATGTGTGTTCAAGGGCTTTCTCGTCATGGAGTTGGTGGACCTTGGAAGCACTGTTTTTCATTGATTATGTCTGTAAAAGAAGAGCCTTTGTT
CATGTCTTCTTATGGTTTGTAATGTAATTAGATACTCTATTACCCTTTCTTTATATCAAGACTTCTGCCTAAGATTTGGTTCTTCATTAGCTGCTTGAAGAATAACCTAC
GTACCTCAATATGAATTGCTTCTTTCTTTCTCTCAA
Protein sequenceShow/hide protein sequence
MSTISGLRPLQMVSEIDTKRCVSEEVEFRRGWTRDQTTFVLKIKEFLFRRSKNLVLKIMTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKA
TGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYS
SYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTL
PSGSSLRSRLIRLCFSLFHRRDDGSSYTNPTSLNVLKFPPKRKIASPNHGSISFSLHSFAQWSALRRG