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CmoCh09G012060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G012060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationCmo_Chr09:9172439..9179953
RNA-Seq ExpressionCmoCh09G012060
SyntenyCmoCh09G012060
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domainsIPR001907 - ATP-dependent Clp protease proteolytic subunit
IPR018215 - ClpP, Ser active site
IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR029045 - ClpP/crotonase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QIB71716.1 ClpP [Epipremnum aureum]2.5e-4265.47Show/hide
Query:  GIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGG
        G   V  GYNF+LINRLYR+RLLFLGQ+V++EISNQ++GLM+YLSIED+ KD YLFINSPGG VI GIAIYDTMQFV PD+HTICMGLAASMGSFILVGG
Subjt:  GIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGG

Query:  EITK---------QSVRLKLSKFMYPHEFYRCIIYGSSI
        EITK         Q  + +++    P+  Y+  +YG SI
Subjt:  EITK---------QSVRLKLSKFMYPHEFYRCIIYGSSI

XP_033517031.1 ATP-dependent Clp protease proteolytic subunit-like [Nicotiana tomentosiformis]1.1e-4080.95Show/hide
Query:  GIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGG
        G   V  GYNF LINRLYR+RLLFLGQ+V++EISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIYDTMQFV+PD+HTICMGLAASMGSFILVGG
Subjt:  GIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGG

Query:  EITKQ
        EITK+
Subjt:  EITKQ

YP_009447475.1 ATP-dependent Clp protease proteolytic subunit [Cucurbita maxima]5.7e-4292.71Show/hide
Query:  NFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        +++ +NRLYRQRLLFLGQDVE+EISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITK+
Subjt:  NFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

YP_009447560.1 ATP-dependent Clp protease proteolytic subunit [Cucurbita moschata]1.5e-4293.75Show/hide
Query:  NFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        +++ +NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITK+
Subjt:  NFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

YP_009505105.1 ATP-dependent Clp protease proteolytic subunit [Cucurbita pepo]5.7e-4296.77Show/hide
Query:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        L NRLYRQRLLFLGQDVE+EISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITK+
Subjt:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

TrEMBL top hitse value%identityAlignment
A0A2H4T1Y8 ATP-dependent Clp protease proteolytic subunit2.7e-4292.71Show/hide
Query:  NFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        +++ +NRLYRQRLLFLGQDVE+EISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITK+
Subjt:  NFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

A0A2H4T274 ATP-dependent Clp protease proteolytic subunit7.2e-4393.75Show/hide
Query:  NFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        +++ +NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITK+
Subjt:  NFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

A0A344AXP4 ATP-dependent Clp protease proteolytic subunit2.7e-4296.77Show/hide
Query:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        L NRLYRQRLLFLGQDVE+EISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITK+
Subjt:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

A0A6C0U9J7 ATP-dependent Clp protease proteolytic subunit1.2e-4265.47Show/hide
Query:  GIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGG
        G   V  GYNF+LINRLYR+RLLFLGQ+V++EISNQ++GLM+YLSIED+ KD YLFINSPGG VI GIAIYDTMQFV PD+HTICMGLAASMGSFILVGG
Subjt:  GIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGG

Query:  EITK---------QSVRLKLSKFMYPHEFYRCIIYGSSI
        EITK         Q  + +++    P+  Y+  +YG SI
Subjt:  EITK---------QSVRLKLSKFMYPHEFYRCIIYGSSI

A0A6C0W3G6 ATP-dependent Clp protease proteolytic subunit1.5e-4067.16Show/hide
Query:  FMSAKEAQAHGIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAA
        F S  E +A  +  +  GYN  LINRLYR+RLLFLGQ V++EISNQ+IGLMIYLSIED+NK+ YLFINSPGG VI GIAIYDTMQFV+PD+HTICMGLAA
Subjt:  FMSAKEAQAHGIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAA

Query:  SMGSFILVGGEITKQSVRLKLSKFMYPHEFYRCI
        SMGSFILVGGEITK        +  +PH + + I
Subjt:  SMGSFILVGGEITKQSVRLKLSKFMYPHEFYRCI

SwissProt top hitse value%identityAlignment
P12210 ATP-dependent Clp protease proteolytic subunit2.1e-3984.62Show/hide
Query:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        NRLYR+RLLFLGQ+V++EISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIYDTMQFV+PD+HTICMGLAASMGSFILVGGEITK+
Subjt:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

Q09FT6 ATP-dependent Clp protease proteolytic subunit4.7e-3984.62Show/hide
Query:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        NRLYR+RLLFLGQ+V++EISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIYDTMQFV PD+HTICMGLAASMGSFILVGGEITK+
Subjt:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

Q2QD64 ATP-dependent Clp protease proteolytic subunit3.6e-3982.8Show/hide
Query:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        L NRLYRQRLLFLGQDV NEISNQI+GLM+YLSIED  KDQYLFINSPGG VI G+ ++DTMQFV PD+HTIC+GLAASMGSFILVGGEITK+
Subjt:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

Q33C07 ATP-dependent Clp protease proteolytic subunit2.1e-3984.62Show/hide
Query:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        NRLYR+RLLFLGQ+V++EISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIYDTMQFV+PD+HTICMGLAASMGSFILVGGEITK+
Subjt:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

Q3C1K4 ATP-dependent Clp protease proteolytic subunit2.1e-3984.62Show/hide
Query:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        NRLYR+RLLFLGQ+V++EISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIYDTMQFV+PD+HTICMGLAASMGSFILVGGEITK+
Subjt:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

Arabidopsis top hitse value%identityAlignment
AT1G02560.1 nuclear encoded CLP protease 56.5e-2037.1Show/hide
Query:  LWVVSEDME--RDAFMSAKEAQAHGIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQF
        +W + +D++     +  A  AQ  G   +V      +I++L++ R++  G  V+++++N I+  ++YL   D  KD  +++NSPGG V AG+AI+DTM+ 
Subjt:  LWVVSEDME--RDAFMSAKEAQAHGIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQF

Query:  VKPDIHTICMGLAASMGSFILVGG
        ++PD+ T+C+GLAASMG+F+L  G
Subjt:  VKPDIHTICMGLAASMGSFILVGG

AT1G12410.1 CLP protease proteolytic subunit 25.5e-1943.68Show/hide
Query:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGE
        N LYR+R++F+GQ+++ E SNQI+  M+YL   D+++  Y+++N PGG +   +AIYDTM+ +K  + T C+GLA ++  F+L  GE
Subjt:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGE

AT1G66670.1 CLP protease proteolytic subunit 31.1e-1947.25Show/hide
Query:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        N L RQR++FLG  V++  ++ +I  ++ L  ED  +D  LFINSPGG + AG+ IYD M+  K D+ T+C+GLAASMG+F+L  G   K+
Subjt:  NRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ

AT5G23140.1 nuclear-encoded CLP protease P71.1e-1639.77Show/hide
Query:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGG
        + +RL ++R++ +   + ++ S+ ++  ++YL  E+ +K  ++++NSPGG V AG+AIYDTMQ+++  I TIC+G AASM S +L  G
Subjt:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGG

ATCG00670.1 plastid-encoded CLP P1.4e-3575.27Show/hide
Query:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ
        + NRLYR+RL FLGQ+V+ EISNQ+I LMIYLSIE + KD YLFINSPGG VI+G+AIYDTMQFV+PD+ TICMGLAAS+ SFILVGG ITK+
Subjt:  LINRLYRQRLLFLGQDVENEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCATCAACCTGCTAGTTCTTTTTATGAGGGACAAACGGGAGAATTGATCCTGGAAGCGGGAGAACTACTGACGCTGCGCGAAACCATCACAAAGGTTTATGTACA
AAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGATATGGAAAGGGATGCTTTTATGTCAGCAAAAGAAGCCCAAGCTCATGGAATTGTTGATGTTGTAGCGGGATACA
ATTTTATCCTAATCAACCGACTTTATCGACAAAGATTACTTTTTTTAGGCCAAGACGTTGAGAACGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATA
GAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGCGGGAATAGCTATTTATGATACTATGCAATTTGTGAAACCAGATATACATAC
AATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACAGAGTGTCAGACTGAAGCTCTCAAAGTTCATGTATCCTCATGAAT
TCTATCGATGCATAATTTATGGTTCATCTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCCATCAACCTGCTAGTTCTTTTTATGAGGGACAAACGGGAGAATTGATCCTGGAAGCGGGAGAACTACTGACGCTGCGCGAAACCATCACAAAGGTTTATGTACA
AAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGATATGGAAAGGGATGCTTTTATGTCAGCAAAAGAAGCCCAAGCTCATGGAATTGTTGATGTTGTAGCGGGATACA
ATTTTATCCTAATCAACCGACTTTATCGACAAAGATTACTTTTTTTAGGCCAAGACGTTGAGAACGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATA
GAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGCGGGAATAGCTATTTATGATACTATGCAATTTGTGAAACCAGATATACATAC
AATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACAGAGTGTCAGACTGAAGCTCTCAAAGTTCATGTATCCTCATGAAT
TCTATCGATGCATAATTTATGGTTCATCTATTTGA
Protein sequenceShow/hide protein sequence
MIHQPASSFYEGQTGELILEAGELLTLRETITKVYVQRTGKPLWVVSEDMERDAFMSAKEAQAHGIVDVVAGYNFILINRLYRQRLLFLGQDVENEISNQIIGLMIYLSI
EDENKDQYLFINSPGGGVIAGIAIYDTMQFVKPDIHTICMGLAASMGSFILVGGEITKQSVRLKLSKFMYPHEFYRCIIYGSSI