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CmoCh09G012210 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G012210
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S12
Genome locationCmo_Chr09:9680973..9682744
RNA-Seq ExpressionCmoCh09G012210
SyntenyCmoCh09G012210
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV07194.1 NADH dehydrogenase subunit 3, mitochondrial [Tanacetum cinerariifolium]1.7e-0475Show/hide
Query:  ENSARTALKLRINIPKSKEYACVFQREHRKNLIQLH
        EN ART L+L IN+P+SKEYA V++REHRKNLIQLH
Subjt:  ENSARTALKLRINIPKSKEYACVFQREHRKNLIQLH

KAF3452163.1 hypothetical protein FNV43_RR08261 [Rhamnella rubrinervis]1.4e-0668.18Show/hide
Query:  CKIDKAKYENSARTALKLRINIPKSKEYACVFQREHRKNLIQLH
        C  D ++ +N ART L+LRIN+P+SKEYA VFQREH+KNLIQLH
Subjt:  CKIDKAKYENSARTALKLRINIPKSKEYACVFQREHRKNLIQLH

KAG2611575.1 hypothetical protein PVAP13_4KG104120 [Panicum virgatum]1.6e-0781.4Show/hide
Query:  ENSAQTVLELQINIPRSKEYAHVFQREHRKKPNSAPRKIAKVR
        +N A+TVLEL+IN+PRSKEYA VF+REHRKKPNSA RKIAKVR
Subjt:  ENSAQTVLELQINIPRSKEYAHVFQREHRKKPNSAPRKIAKVR

KAG7014891.1 hypothetical protein SDJN02_22522, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-1370.77Show/hide
Query:  HGVHSRLSMRTLKKPNSTLCKIDKAKYENSARTALKLRINIPKSKEYACVFQREHRKNLIQLHVR
        HG++S     +L+  ++T      AKYENSARTALKLRINIPKSKEYACVFQREHRKNLIQLHVR
Subjt:  HGVHSRLSMRTLKKPNSTLCKIDKAKYENSARTALKLRINIPKSKEYACVFQREHRKNLIQLHVR

XP_042751547.1 ribosomal protein S12, mitochondrial-like [Lactuca sativa]5.7e-0573.81Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR C+ TR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

TrEMBL top hitse value%identityAlignment
A0A385G2D2 Ribosomal protein S128.0e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

A0A6A4P1M9 Putative ribosomal protein S12/S238.0e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

A0A6A5L832 Uncharacterized protein8.0e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

O47435 Ribosomal protein S128.0e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

Q7J5Z4 Ribosomal protein S128.0e-0576.19Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  LSTR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

SwissProt top hitse value%identityAlignment
P27070 Ribosomal protein S12, mitochondrial1.8e-0671.43Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  + TR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

P28520 Ribosomal protein S12, mitochondrial1.6e-0567.39Show/hide
Query:  KRHTDCTRASNQYSQKQGVRLRLSTRTLKKPNSTLCKINKVRKWHR
        K+ TD TRAS+Q  QKQGV LR+STRT KKPNS L KI KVR  +R
Subjt:  KRHTDCTRASNQYSQKQGVRLRLSTRTLKKPNSTLCKINKVRKWHR

P60096 Ribosomal protein S12, mitochondrial1.8e-0671.43Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  + TR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

P60097 Ribosomal protein S12, mitochondrial1.8e-0671.43Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+AS+QCPQKQ VR  + TR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

Q95869 Ribosomal protein S12, mitochondrial2.0e-0569.05Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+A +QCPQKQ V   +STR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein2.1e-0564.29Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+A ++CPQK  V   +STR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR

ATMG00980.1 Ribosomal protein S12/S23 family protein2.1e-0564.29Show/hide
Query:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR
        KRR D T+A ++CPQK  V   +STR  KK NSAPRKIAKVR
Subjt:  KRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCCCCAAGTACGAAAACGGTGCACAGACCGTACT
CGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAAC
GGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATA
GCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTC
AACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCGAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACAC
GAAAAAATCTGATTCAACTCAACCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGA
GAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGATACGA
AAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCTCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTA
AGATAGCCAAAGTACGAAAACGGCACACGAACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTG
AGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATG
GCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAG
ACAAAGCAAAGTACGAAAACAGCGCACGGACCGCACTCAAGCTTCGAATCAATATCCCAAAAAGCAAGGAGTACGCTTGTGTCTTTCAACGAGAACACCGTAAAAACCTA
ATTCAGCTCCATGTAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCCCCAAGTACGAAAACGGTGCACAGACCGTACT
CGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAAC
GGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATA
GCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTC
AACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCGAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACAC
GAAAAAATCTGATTCAACTCAACCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGA
GAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGATACGA
AAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCTCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTA
AGATAGCCAAAGTACGAAAACGGCACACGAACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTG
AGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATG
GCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAG
ACAAAGCAAAGTACGAAAACAGCGCACGGACCGCACTCAAGCTTCGAATCAATATCCCAAAAAGCAAGGAGTACGCTTGTGTCTTTCAACGAGAACACCGTAAAAACCTA
ATTCAGCTCCATGTAAGATAG
Protein sequenceShow/hide protein sequence
MVEKKNGVRTILELQINVSKSKEYACPKYENGAQTVLELWINIPRSQEYICVFQREHLKKPNSNPRKIAKVRKRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKI
AKVRKRHTDCTRASNQYSQKQGVRLRLSTRTLKKPNSTLCKINKVRKWHRDCTRASDQYPKKQGVCARPSTRTRKNLIQLNPKYENGARTVLELQINISRSKKYARVFQR
EHRKKPNSAPRKIAKVRKRCTDRTRALDQCPLKQRYENSAQTVLELQINIPRSKEYAHVFQREHRKKPNSAPRKIAKVRKRHTNRTRASDQCPLKQGIAKVRKRRTKSYL
SFRSISLEARSTLVSFNENTEKKPNLALRKIDKVQKWRTDCTRALDQYPHKHGVHSRLSMRTLKKPNSTLCKIDKAKYENSARTALKLRINIPKSKEYACVFQREHRKNL
IQLHVR