CuGenDBv2

Gene ID	CmoCh09G012240
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem II protein D1
Genome location	Cmo_Chr09:9981273..9982379
RNA-Seq Expression	CmoCh09G012240
Synteny	CmoCh09G012240
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ALI90515.1 PsbA, partial [Ryticaryum macrocarpum]

3.2e-22

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

GER47751.1 photosystem Q protein [Striga asiatica]

2.5e-22

74.12

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID---VYETNV
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID   +Y  N+
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID---VYETNV

KAF6138338.1 hypothetical protein GIB67_033140 [Kingdonia uniflora]

3.2e-22

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

WP_124939276.1 photosystem II q(b) protein, partial [Vibrio viridaestus]

3.2e-22

72.41

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDVYETNVCISIM
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID     V  S++
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDVYETNVCISIM

YP_010159198.1 photosystem II protein D1 [Philenoptera violacea]

1.1e-22

72.73

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDVYETNVCISIMS
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID     V  S++S
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDVYETNVCISIMS

TrEMBL top hits

e value

%identity

Alignment

A0A0F7RND6 Photosystem II protein D1

1.6e-22

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

A0A0U2SYW5 Photosystem II protein D1

1.6e-22

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

A0A1V0IN99 Photosystem II protein D1

1.6e-22

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

A0A2L0VCP4 Photosystem II protein D1

1.6e-22

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

A0A5A7QV25 Photosystem II protein D1

1.2e-22

74.12

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID---VYETNV
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID   +Y  N+
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID---VYETNV

SwissProt top hits

e value

%identity

Alignment

A4QJ96 Photosystem II protein D1

4.2e-25

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

A4QJI0 Photosystem II protein D1

4.2e-25

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

A4QJZ9 Photosystem II protein D1

4.2e-25

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

P02956 Photosystem II protein D1

4.2e-25

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

P83755 Photosystem II protein D1

4.2e-25

80.26

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Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

3.0e-26

80.26

Show/hide

Query:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
        MTAILERRESES               LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID
Subjt:  MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDID

Sequences

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CDS sequence

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ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCCACTGAAAACCGTCTTTACATTGGATGGTTTGGGCCTATGGGGTCGTTTCTGTAACTGGATAAC
CAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAG
ATATTGATGTGTATGAGACCAATGTATGCATTTCGATTATGTCTTTTTCATTCCGTCGAAAATCGATTTTACGATATAGACGCTTACAACCTCCCCCTCTATGCCCTGCA
GTAATGATTCCTTTGGCATTACGACCTTTACCACAAGGATGTTGTTCATAG

mRNA sequence

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Protein sequence

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MTAILERRESESLWGPLKTVFTLDGLGLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDVYETNVCISIMSFSFRRKSILRYRRLQPPPLCPA
VMIPLALRPLPQGCCS

CmoCh09G012240 (gene) of Cucurbita moschata (Rifu) v1 genome