CuGenDBv2

Gene ID	CmoCh09G012250
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ATP synthase epsilon chain, chloroplastic
Genome location	Cmo_Chr09:10331246..10332027
RNA-Seq Expression	CmoCh09G012250
Synteny	CmoCh09G012250
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR001469 - ATP synthase, F1 complex, delta/epsilon subunit IPR020547 - ATP synthase delta/epsilon subunit, C-terminal domain

Homology

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GenBank top hits

e value

%identity

Alignment

ALO22128.1 AtpE [Cucurbita ficifolia]

1.2e-16

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

ASY96329.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis]

1.2e-16

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

YP_009751744.1 CF1 subunit epsilon [Herpetospermum pedunculosum]

1.2e-16

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

YP_009751996.1 CF1 subunit epsilon [Cionosicys macranthus]

1.2e-16

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

YP_009752081.1 CF1 subunit epsilon [Dendrosicyos socotranus]

1.2e-16

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU14 ATP synthase epsilon chain, chloroplastic

5.7e-17

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

A0A1X9Q1L0 ATP synthase epsilon chain, chloroplastic

5.7e-17

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

A0A218KG49 ATP synthase epsilon chain, chloroplastic

5.7e-17

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

A0A249RZA2 ATP synthase epsilon chain, chloroplastic

5.7e-17

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

G3ETZ1 ATP synthase epsilon chain, chloroplastic

5.7e-17

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

SwissProt top hits

e value

%identity

Alignment

A0A341 ATP synthase epsilon chain, chloroplastic

2.1e-16

85.19

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV
        +DAEK SDIDPQEAQQTLEIAE NL+KA+ KRQTIEANLAL+RARTRVEAIN V
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV

A0ZZ41 ATP synthase epsilon chain, chloroplastic

4.6e-16

83.33

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV
        +DAEK SDIDPQEAQQ LEIAE NLRKA+ KRQTIEANLAL+RARTRVEAIN +
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV

Q09MH2 ATP synthase epsilon chain, chloroplastic

2.1e-16

83.33

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV
        +DAEK+SDIDPQEAQQTLEIAE NLRKA+ KRQTIEANLAL+RARTRVE IN +
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV

Q49KZ2 ATP synthase epsilon chain, chloroplastic

4.6e-16

81.48

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV
        +DAEK SDIDPQEAQ+TLE+AE NLRKA+ KRQTIEANLAL+RARTRVEAIN +
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV

Q4VZG9 ATP synthase epsilon chain, chloroplastic

1.5e-19

92.86

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS
        +DAEKASDIDPQEAQQTLEIAE NLRKAQ KRQTIEANLAL+RARTRVEAINGVPS
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00470.1 ATP synthase epsilon chain

4.3e-17

83.33

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Query:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV
        +DAEK SDIDPQEAQQTLEIAE NLRKA+ KRQTIEANLAL+RARTRVEA+N +
Subjt:  HDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGV

Sequences

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CDS sequence

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ATGGGTTCTCTACCTTGGAGGAATAGAAGTTTTGCAAATTCAAGAGAAGATCATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAAT
AGCGGAAGTTAACTTGAGGAAAGCTCAGGACAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAAACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCTAGTT
GA

mRNA sequence

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Protein sequence

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MGSLPWRNRSFANSREDHDAEKASDIDPQEAQQTLEIAEVNLRKAQDKRQTIEANLALKRARTRVEAINGVPS

CmoCh09G012250 (gene) of Cucurbita moschata (Rifu) v1 genome