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CmoCh09G012410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G012410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGuanine nucleotide-binding protein, beta subunit
Genome locationCmo_Chr09:10664889..10671245
RNA-Seq ExpressionCmoCh09G012410
SyntenyCmoCh09G012410
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR019775 - WD40 repeat, conserved site
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138371.1 angio-associated migratory cell protein [Cucumis sativus]5.5e-2589.71Show/hide
Query:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP
        T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDL+QSTP
Subjt:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP

XP_008463066.1 PREDICTED: angio-associated migratory cell protein isoform X1 [Cucumis melo]1.9e-2591.18Show/hide
Query:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP
        T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDLRQSTP
Subjt:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP

XP_008463068.1 PREDICTED: angio-associated migratory cell protein isoform X2 [Cucumis melo]1.9e-2591.18Show/hide
Query:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP
        T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDLRQSTP
Subjt:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP

XP_023535004.1 angio-associated migratory cell protein-like [Cucurbita pepo subsp. pepo]2.5e-2591.18Show/hide
Query:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP
        T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD KLIIWDLRQSTP
Subjt:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP

XP_038884723.1 angio-associated migratory cell protein [Benincasa hispida]5.5e-2589.71Show/hide
Query:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP
        T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDL+QSTP
Subjt:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP

TrEMBL top hitse value%identityAlignment
A0A0A0KBX7 WD_REPEATS_REGION domain-containing protein2.7e-2589.71Show/hide
Query:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP
        T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDL+QSTP
Subjt:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP

A0A1S3CIC4 angio-associated migratory cell protein isoform X19.1e-2691.18Show/hide
Query:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP
        T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDLRQSTP
Subjt:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP

A0A1S3CID2 angio-associated migratory cell protein isoform X29.1e-2691.18Show/hide
Query:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP
        T  S LALTGSKDGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDLRQSTP
Subjt:  TRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP

A0A6J1EQW6 angio-associated migratory cell protein1.3e-2456.67Show/hide
Query:  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPAR------GWSIMSYL--DWHVEISCNRGK---WK
        S LAL+GS DGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDLRQS+P        G + ++++    +V   C  G+   W 
Subjt:  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPAR------GWSIMSYL--DWHVEISCNRGK---WK

Query:  SDIIQSLNLKLGLTNKIESI
        S + + +    G T+ I+S+
Subjt:  SDIIQSLNLKLGLTNKIESI

A0A6J1IRV7 angio-associated migratory cell protein1.3e-2456.67Show/hide
Query:  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPAR------GWSIMSYL--DWHVEISCNRGK---WK
        S LAL+GS DGSVHIVNI+TGKVVNSLVSHS+SIECIGLAPSSPWAATGGMD+KLIIWDLRQS+P        G + ++++    +V   C  G+   W 
Subjt:  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPAR------GWSIMSYL--DWHVEISCNRGK---WK

Query:  SDIIQSLNLKLGLTNKIESI
        S + + +    G T+ I+S+
Subjt:  SDIIQSLNLKLGLTNKIESI

SwissProt top hitse value%identityAlignment
F4I9T0 BEACH domain-containing protein B1.0e-0533.33Show/hide
Query:  MWKPLPNTRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWD-LRQSTPAR
        M  PL N  VS     G+ + S H+++++ G+VV S+  H + + C+ +   S   ATG  D  +++WD LR  TP +
Subjt:  MWKPLPNTRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWD-LRQSTPAR

O61585 Katanin p80 WD40 repeat-containing subunit B12.9e-0533.33Show/hide
Query:  LALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQ
        L + GS+ G++ I ++   K+V +L  H NSI C+   P   + A+G  D  + +WD+R+
Subjt:  LALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQ

Q54J37 Striatin homolog3.8e-0533.87Show/hide
Query:  LALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQST
        LA+TGS+D  +   ++++  VV+S+++HSNSI  + + PS  + A+   D  +  WD+   T
Subjt:  LALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQST

Q5FVN8 WD repeat, SAM and U-box domain-containing protein 12.9e-0535.44Show/hide
Query:  MLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPARGWSIMSYLDWHVE
        MLA +GS D SV I +I T  V+++L  H+  +     AP++   ATG MD+ + IW     TP +  S+   L   +E
Subjt:  MLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPARGWSIMSYLDWHVE

Q9D994 WD repeat-containing protein 381.1e-0437.04Show/hide
Query:  TGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPARGWSIMSY--LDWHV-EISC
        +G  D    +  + +G+ V+ LV H +SI+    +P+S   ATG  D  + IWDLR STP     ++SY  L+ H   ISC
Subjt:  TGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPARGWSIMSY--LDWHV-EISC

Arabidopsis top hitse value%identityAlignment
AT1G58230.1 binding7.2e-0733.33Show/hide
Query:  MWKPLPNTRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWD-LRQSTPAR
        M  PL N  VS     G+ + S H+++++ G+VV S+  H + + C+ +   S   ATG  D  +++WD LR  TP +
Subjt:  MWKPLPNTRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWD-LRQSTPAR

AT1G71840.1 transducin family protein / WD-40 repeat family protein1.5e-2070.59Show/hide
Query:  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSS---PWAATGGMDRKLIIWDLRQSTP
        S LA++GSKDGSVHIVNI TGKVV+SL SH++S+EC+  +PSS   P AATGGMD+KLIIWDL+ STP
Subjt:  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSS---PWAATGGMDRKLIIWDLRQSTP

AT2G43770.1 Transducin/WD40 repeat-like superfamily protein1.4e-0533.33Show/hide
Query:  TGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP
        TG  D  V + ++  G+   +L  H ++I  + L+P   +  T GMD KL +WD+R   P
Subjt:  TGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTP

AT5G52820.1 WD-40 repeat family protein / notchless protein, putative9.7e-0434.48Show/hide
Query:  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIW
        S L L+GSKD ++ I  I T K+   L  H++ +  +  +P      +GG DR L +W
Subjt:  SMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAACCTCTCCCTAACACACGCGTTTCAATGCTTGCTCTTACCGGTTCAAAAGATGGTTCTGTTCATATTGTGAACATATCGACTGGAAAGGTCGTTAATTCTCT
GGTTTCTCATTCAAATTCAATCGAGTGCATCGGTCTAGCGCCAAGCTCCCCTTGGGCTGCAACCGGAGGAATGGATCGTAAGCTCATCATTTGGGATCTTCGACAGTCGA
CGCCAGCACGAGGATGGAGTATCATGTCTTACTTGGATTGGCACGTCGAGATATCTTGCAACCGGGGTAAATGGAAGTCAGATATAATTCAATCTTTAAATCTAAAACTG
GGACTAACAAACAAAATTGAGTCGATTATGCAGCCAAAAAAGAAGGGTGATATTCCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAACCTCTCCCTAACACACGCGTTTCAATGCTTGCTCTTACCGGTTCAAAAGATGGTTCTGTTCATATTGTGAACATATCGACTGGAAAGGTCGTTAATTCTCT
GGTTTCTCATTCAAATTCAATCGAGTGCATCGGTCTAGCGCCAAGCTCCCCTTGGGCTGCAACCGGAGGAATGGATCGTAAGCTCATCATTTGGGATCTTCGACAGTCGA
CGCCAGCACGAGGATGGAGTATCATGTCTTACTTGGATTGGCACGTCGAGATATCTTGCAACCGGGGTAAATGGAAGTCAGATATAATTCAATCTTTAAATCTAAAACTG
GGACTAACAAACAAAATTGAGTCGATTATGCAGCCAAAAAAGAAGGGTGATATTCCTAAATAA
Protein sequenceShow/hide protein sequence
MWKPLPNTRVSMLALTGSKDGSVHIVNISTGKVVNSLVSHSNSIECIGLAPSSPWAATGGMDRKLIIWDLRQSTPARGWSIMSYLDWHVEISCNRGKWKSDIIQSLNLKL
GLTNKIESIMQPKKKGDIPK