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CmoCh09G012730 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G012730
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
Genome locationCmo_Chr09:11150025..11150285
RNA-Seq ExpressionCmoCh09G012730
SyntenyCmoCh09G012730
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607523.1 Succinate dehydrogenase assembly factor 1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2782.14Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        MG+SS PKLSG+QKQVLSLYR+FLRAARSKSAEDR+++ESVV+AEFRRNAK IDRK+FI+IEYLLRRGNKQLDQL+S ATV +S
Subjt:  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

XP_008459591.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis melo]3.0e-2789.61Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        KLSGLQKQVLSLYR+FLRAAR+KS EDR+QMES+VAAEFRRNAKQIDRKNFI+IEYLLRRGNKQLDQLKS ATVR+S
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

XP_022141880.1 succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia]1.7e-2791.03Show/hide
Query:  PKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        PKLSGLQKQVLSLYR FLRAARSKSAEDRRQMES+VAAEFRRNA QID KNFI+IEYLLRRGNKQLDQLKS ATVR+S
Subjt:  PKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

XP_023525064.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo]1.2e-2884.52Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        MG+SS PKLSG+Q+QVLSLYR+FLRAARSKSAEDRRQ+ESVV+AEFRRNAK IDRKNFI+IEYLLRRGNKQLDQL+S ATV +S
Subjt:  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

XP_038890134.1 succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]4.6e-2892.21Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        KLSGLQKQVLSLYR+FLRAARSKSAEDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKS  TVR S
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

TrEMBL top hitse value%identityAlignment
A0A0A0KST3 Uncharacterized protein4.2e-2788.31Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        KLSGLQKQVLSLYR+FLRAAR+KS EDR+QMES+VA EFRRNAKQIDRKNFI+IEYLLRRGNKQLDQLKS ATVR+S
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

A0A1S3CAJ2 succinate dehydrogenase assembly factor 1, mitochondrial1.4e-2789.61Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        KLSGLQKQVLSLYR+FLRAAR+KS EDR+QMES+VAAEFRRNAKQIDRKNFI+IEYLLRRGNKQLDQLKS ATVR+S
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

A0A6J1CJC1 succinate dehydrogenase assembly factor 1, mitochondrial8.4e-2891.03Show/hide
Query:  PKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        PKLSGLQKQVLSLYR FLRAARSKSAEDRRQMES+VAAEFRRNA QID KNFI+IEYLLRRGNKQLDQLKS ATVR+S
Subjt:  PKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

A0A6J1EX50 LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial3.2e-2780.95Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        MG+SS PKLSG+QKQVLSLY +FLRAARSKSAEDR+++ESVV+AEFRRNAK IDRK+FI+IEYLLRRGNKQLDQL+S ATV +S
Subjt:  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

A0A6J1I7F5 succinate dehydrogenase assembly factor 1, mitochondrial2.7e-2679.76Show/hide
Query:  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        MG+SS PKLSG+Q QVLSLYR+FLRAARSKSAEDR+ +ESVV+AEFRRNAK ID KNFI+IEYLLRRG+KQLDQL+S ATV +S
Subjt:  MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

SwissProt top hitse value%identityAlignment
A6NFY7 Succinate dehydrogenase assembly factor 1, mitochondrial1.3e-0645.45Show/hide
Query:  SGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVSRF
        S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG +QL  L+S     +  F
Subjt:  SGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVSRF

A6ZYX9 Succinate dehydrogenase assembly factor 1, mitochondrial4.3e-0543.08Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQL
        +LSGLQK+VL LYR+ +R A +K  E++    + +  EF +  + + RK+F  IE+LLR GNK++
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQL

A8PU71 Succinate dehydrogenase assembly factor 1, mitochondrial1.0e-0645.45Show/hide
Query:  SGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVSRF
        S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG +QL  L+S     +  F
Subjt:  SGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVSRF

B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial2.1e-0745.57Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVSRF
        +LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL RRG +QL  L+S     +  F
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVSRF

Q3U276 Succinate dehydrogenase assembly factor 1, mitochondrial5.1e-0644.16Show/hide
Query:  SGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVSRF
        S LQ+QVLSLYR  LRA R     + R     V AEFR++A  + R + + IEYL RRG +QL  L+S     +  F
Subjt:  SGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVSRF

Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein6.2e-2368.83Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        KLSG+QKQVLSLYR FLRAARS+  EDR+++E +V+ EFR N+K++DRKNF +IEYLLR G KQLDQLKS A V +S
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS

AT2G39725.2 LYR family of Fe/S cluster biogenesis protein6.2e-2368.83Show/hide
Query:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS
        KLSG+QKQVLSLYR FLRAARS+  EDR+++E +V+ EFR N+K++DRKNF +IEYLLR G KQLDQLKS A V +S
Subjt:  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATCTCATCGGGGCCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGATCATTTCTTCGAGCAGCTCGTTCCAAATCCGCCGAAGATCGACGGCA
AATGGAATCGGTTGTCGCCGCTGAGTTCCGCCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATC
AACTTAAAAGCTCTGCAACCGTTCGGGTATCAAGATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTATCTCATCGGGGCCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGATCATTTCTTCGAGCAGCTCGTTCCAAATCCGCCGAAGATCGACGGCA
AATGGAATCGGTTGTCGCCGCTGAGTTCCGCCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATC
AACTTAAAAGCTCTGCAACCGTTCGGGTATCAAGATTCTGA
Protein sequenceShow/hide protein sequence
MGISSGPKLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRGNKQLDQLKSSATVRVSRF