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CmoCh09G012880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G012880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUPF0481 protein At3g47200-like
Genome locationCmo_Chr09:11435659..11436021
RNA-Seq ExpressionCmoCh09G012880
SyntenyCmoCh09G012880
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025181.1 UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-6299.16Show/hide
Query:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
        MELSRLHNKDALVEIITQNLNSHLENLPDDLERK NGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
Subjt:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE

Query:  LWDMLEDLQRSYDKLDDEW
        LWDMLEDLQRSYDKLDDEW
Subjt:  LWDMLEDLQRSYDKLDDEW

XP_022925442.1 UPF0481 protein At3g47200-like [Cucurbita moschata]1.8e-6299.16Show/hide
Query:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
        MELSRLHNKDALVEIITQNLNSHLENLPDDLERK NGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
Subjt:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE

Query:  LWDMLEDLQRSYDKLDDEW
        LWDMLEDLQRSYDKLDDEW
Subjt:  LWDMLEDLQRSYDKLDDEW

XP_022925443.1 UPF0481 protein At3g47200-like [Cucurbita moschata]3.1e-3866.92Show/hide
Query:  MELSRLHNKD-----------ALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR
        MELS   NKD           A+VE IT+NL   LE+LPD  +RK NGASIYRIP+HIKKV+P AFKP+ VSFGPYHHGE HL PMEK K LA++ FERR
Subjt:  MELSRLHNKD-----------ALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR

Query:  CGLCVEDIVNELWDMLEDLQRSYDKLDDEW
        CGL  ED+V ELWDMLEDLQ SYDKLDD+W
Subjt:  CGLCVEDIVNELWDMLEDLQRSYDKLDDEW

XP_022925444.1 UPF0481 protein At3g47200-like [Cucurbita moschata]3.3e-4877.31Show/hide
Query:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
        ME SR  NKDA+VEI+TQN+ SHL NLPDDLE K N ASIYRIP+HIKKV+P AFKP+ +SFGPYHHGELHL P EK+KHLA RYFE+RCGL +ED+VNE
Subjt:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE

Query:  LWDMLEDLQRSYDKLDDEW
        +WDMLEDLQRSYDKLDD+W
Subjt:  LWDMLEDLQRSYDKLDDEW

XP_023535324.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]1.0e-6299.16Show/hide
Query:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
        MELSRLHNKDALVEIITQNLNSHLENLPDDLERK NGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
Subjt:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE

Query:  LWDMLEDLQRSYDKLDDEW
        LWDMLEDLQRSYDKLDDEW
Subjt:  LWDMLEDLQRSYDKLDDEW

TrEMBL top hitse value%identityAlignment
A0A6J1EBQ1 UPF0481 protein At3g47200-like8.6e-6399.16Show/hide
Query:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
        MELSRLHNKDALVEIITQNLNSHLENLPDDLERK NGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
Subjt:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE

Query:  LWDMLEDLQRSYDKLDDEW
        LWDMLEDLQRSYDKLDDEW
Subjt:  LWDMLEDLQRSYDKLDDEW

A0A6J1EC69 UPF0481 protein At3g47200-like1.6e-4877.31Show/hide
Query:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
        ME SR  NKDA+VEI+TQN+ SHL NLPDDLE K N ASIYRIP+HIKKV+P AFKP+ +SFGPYHHGELHL P EK+KHLA RYFE+RCGL +ED+VNE
Subjt:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE

Query:  LWDMLEDLQRSYDKLDDEW
        +WDMLEDLQRSYDKLDD+W
Subjt:  LWDMLEDLQRSYDKLDDEW

A0A6J1ECA1 UPF0481 protein At3g47200-like1.3e-3768.07Show/hide
Query:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
        ME+  LH+K  +V I TQNL+SHLEN    +  K  GASIYRIPD+I KV+P AFKP+ VSFGPYHHGELHL PMEK KHL    F+R  GLC EDIVNE
Subjt:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE

Query:  LWDMLEDLQRSYDKLDDEW
        +WDMLEDLQ SYDKL DEW
Subjt:  LWDMLEDLQRSYDKLDDEW

A0A6J1EF72 UPF0481 protein At3g47200-like1.5e-3866.92Show/hide
Query:  MELSRLHNKD-----------ALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR
        MELS   NKD           A+VE IT+NL   LE+LPD  +RK NGASIYRIP+HIKKV+P AFKP+ VSFGPYHHGE HL PMEK K LA++ FERR
Subjt:  MELSRLHNKD-----------ALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR

Query:  CGLCVEDIVNELWDMLEDLQRSYDKLDDEW
        CGL  ED+V ELWDMLEDLQ SYDKLDD+W
Subjt:  CGLCVEDIVNELWDMLEDLQRSYDKLDDEW

A0A6J1EI01 putative UPF0481 protein At3g026458.1e-3766.39Show/hide
Query:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE
        MELS L+ +      + Q+L SHL N+ DDLE K+NGASIYRIP+HIKKV+P AFKP+ +SFGPYHH + HL P+EK KHLAL  F+RRCGL  EDIV+E
Subjt:  MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNE

Query:  LWDMLEDLQRSYDKLDDEW
        L+ MLEDLQRSYDKLDD+W
Subjt:  LWDMLEDLQRSYDKLDDEW

SwissProt top hitse value%identityAlignment
Q9SD53 UPF0481 protein At3g472001.9e-0633.33Show/hide
Query:  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYF---ERRCGLCVEDIVNELWDMLEDLQRSYDK
        I+R+P+    ++PKA+KPK VS GPYH+GE HL  +++ K   L+ F    ++  +    +V  + D+ + +++SY +
Subjt:  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYF---ERRCGLCVEDIVNELWDMLEDLQRSYDK

Arabidopsis top hitse value%identityAlignment
AT3G47210.1 Plant protein of unknown function (DUF247)4.2e-0934.67Show/hide
Query:  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDK
        I+R+P    +++P+A+KPK VS GPYHHG  HL  +++ K   L  F R   +  + + N + D  +++++SY +
Subjt:  IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDK

AT3G47250.1 Plant protein of unknown function (DUF247)4.2e-0942.53Show/hide
Query:  RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR
        R  ++ ++V  I +NL S     P  L   A  AS  I+RIPD + +V+PKA+KPK VS GPYH+GE HL  +++ K   L  F  R
Subjt:  RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR

AT3G47250.2 Plant protein of unknown function (DUF247)4.2e-0942.53Show/hide
Query:  RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR
        R  ++ ++V  I +NL S     P  L   A  AS  I+RIPD + +V+PKA+KPK VS GPYH+GE HL  +++ K   L  F  R
Subjt:  RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR

AT3G47250.3 Plant protein of unknown function (DUF247)4.2e-0942.53Show/hide
Query:  RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR
        R  ++ ++V  I +NL S     P  L   A  AS  I+RIPD + +V+PKA+KPK VS GPYH+GE HL  +++ K   L  F  R
Subjt:  RLHNKDALVEIITQNLNSHLENLPDDLERKANGAS--IYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERR

AT3G50160.1 Plant protein of unknown function (DUF247)9.9e-1131.43Show/hide
Query:  NKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLED
        N+  L EI   +LN  ++ L D+     +   IYR+P ++++   K++ P+ VS GPYHHG  HL PME+ K  A+     R    +E  ++ + ++ E 
Subjt:  NKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLED

Query:  LQRSY
         +  Y
Subjt:  LQRSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGG
AGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTC
CCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGA
TCATATGATAAACTTGATGATGAATGGTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTGTCACGGCTACATAACAAGGATGCATTGGTCGAGATTATTACCCAAAATCTAAATTCTCATTTGGAAAATCTTCCGGATGATCTTGAAAGGAAAGCCAATGG
AGCTTCAATCTATAGAATACCGGACCATATAAAGAAGGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCATGGGGAACTGCATTTGTCTC
CCATGGAAAAGATGAAACATTTGGCACTTCGCTATTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGA
TCATATGATAAACTTGATGATGAATGGTGTTAG
Protein sequenceShow/hide protein sequence
MELSRLHNKDALVEIITQNLNSHLENLPDDLERKANGASIYRIPDHIKKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQR
SYDKLDDEWC