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CmoCh09G012900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G012900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUPF0481 protein At3g47200-like
Genome locationCmo_Chr09:11451664..11452313
RNA-Seq ExpressionCmoCh09G012900
SyntenyCmoCh09G012900
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025181.1 UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-4492.55Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI
        I KVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG   +++
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI

XP_022925442.1 UPF0481 protein At3g47200-like [Cucurbita moschata]2.8e-4492.55Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI
        I KVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG   +++
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI

XP_022925444.1 UPF0481 protein At3g47200-like [Cucurbita moschata]6.9e-3573.4Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI
        I KV+P AFKP+ +SFGPYHHGELHL P EK+KHLA RYFE+RCGL +ED+VNE+WDMLEDLQRSYDKLDD+WK +P KFLE+MILDG   I++
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI

XP_022925474.1 UPF0481 protein At3g47200-like [Cucurbita moschata]1.2e-3176.4Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGY
        I+KV+P AFKP+ VSFGPYHHGELHL PMEK KHL    F+R  GLC EDIVNE+WDMLEDLQ SYDKL DEWK KP KFLEVMI+DGY
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGY

XP_023535324.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]2.8e-4492.55Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI
        I KVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG   +++
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI

TrEMBL top hitse value%identityAlignment
A0A6J1EBQ1 UPF0481 protein At3g47200-like1.3e-4492.55Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI
        I KVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG   +++
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI

A0A6J1EC69 UPF0481 protein At3g47200-like3.3e-3573.4Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI
        I KV+P AFKP+ +SFGPYHHGELHL P EK+KHLA RYFE+RCGL +ED+VNE+WDMLEDLQRSYDKLDD+WK +P KFLE+MILDG   I++
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEI

A0A6J1ECA1 UPF0481 protein At3g47200-like5.9e-3276.4Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGY
        I+KV+P AFKP+ VSFGPYHHGELHL PMEK KHL    F+R  GLC EDIVNE+WDMLEDLQ SYDKL DEWK KP KFLEVMI+DGY
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGY

A0A6J1EF72 UPF0481 protein At3g47200-like3.8e-3175Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG
        I KV+P AFKP+ VSFGPYHHGE HL PMEK K LA++ FERRCGL  ED+V ELWDMLEDLQ SYDKLDD+WK KP KFLE+M+LDG
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG

A0A6J1EI01 putative UPF0481 protein At3g026451.4e-2871.59Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG
        I KV+P AFKP+ +SFGPYHH + HL P+EK KHLAL  F+RRCGL  EDIV+EL+ MLEDLQRSYDKLDD+WK  P KFLE+MILDG
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG

SwissProt top hitse value%identityAlignment
Q9SD53 UPF0481 protein At3g472001.6e-0532.22Show/hide
Query:  IKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYF---ERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG
        + ++PKA+KPK VS GPYH+GE HL  +++ K   L+ F    ++  +    +V  + D+ + +++SY     E  K     + +M+LDG
Subjt:  IKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYF---ERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG

Arabidopsis top hitse value%identityAlignment
AT3G47210.1 Plant protein of unknown function (DUF247)1.2e-0833.72Show/hide
Query:  KVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG
        +++P+A+KPK VS GPYHHG  HL  +++ K   L  F R   +  + + N + D  +++++SY    +  +  P + + +MILDG
Subjt:  KVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG

AT3G47250.1 Plant protein of unknown function (DUF247)3.8e-0732.97Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRC---GLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG
        + +V+PKA+KPK VS GPYH+GE HL  +++ K   L  F  R    G+    +   +  +   ++ SY    +E + + ++ + +MILDG
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRC---GLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG

AT3G47250.2 Plant protein of unknown function (DUF247)3.8e-0732.97Show/hide
Query:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRC---GLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG
        + +V+PKA+KPK VS GPYH+GE HL  +++ K   L  F  R    G+    +   +  +   ++ SY    +E + + ++ + +MILDG
Subjt:  IIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRC---GLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDG

AT3G50150.1 Plant protein of unknown function (DUF247)4.1e-0932.58Show/hide
Query:  KAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEIY
        K++ P+ VS GPYHHG++HL PME+ K  A+     R    +E  ++ + ++ E+ +  Y    D   K   +F E+++LDG   +E++
Subjt:  KAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEIY

AT3G50160.1 Plant protein of unknown function (DUF247)5.9e-0832.58Show/hide
Query:  KAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEIY
        K++ P+ VS GPYHHG  HL PME+ K  A+     R    +E  ++ + ++ E  +  Y            +F+E+++LDG   IEI+
Subjt:  KAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATAATTAAAGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCACGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTT
GGCACTTCGCTACTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATG
AATGGAAAAAGAAACCAACCAAGTTTTTGGAGGTTATGATCTTGGATGGATACCGATGTATCGAAATTTACTACTACGGATGTACTACGAGATATGTTGCTGCTCGAGAA
TCAGCTGCCCATGAAGCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATAATTAAAGTTCATCCAAAGGCATTCAAGCCGAAGCGGGTATCGTTCGGGCCATACCACCACGGGGAACTGCATTTGTCTCCCATGGAAAAGATGAAACATTT
GGCACTTCGCTACTTCGAAAGGCGCTGCGGGTTGTGTGTTGAAGACATCGTGAATGAGCTGTGGGACATGTTGGAAGATCTGCAGAGATCATATGATAAACTTGATGATG
AATGGAAAAAGAAACCAACCAAGTTTTTGGAGGTTATGATCTTGGATGGATACCGATGTATCGAAATTTACTACTACGGATGTACTACGAGATATGTTGCTGCTCGAGAA
TCAGCTGCCCATGAAGCTTCTTGA
Protein sequenceShow/hide protein sequence
MRIIKVHPKAFKPKRVSFGPYHHGELHLSPMEKMKHLALRYFERRCGLCVEDIVNELWDMLEDLQRSYDKLDDEWKKKPTKFLEVMILDGYRCIEIYYYGCTTRYVAARE
SAAHEAS