; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G013050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G013050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMADS-box transcription factor
Genome locationCmo_Chr09:11579332..11582914
RNA-Seq ExpressionCmoCh09G013050
SyntenyCmoCh09G013050
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR033896 - MADS MEF2-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592380.1 Agamous-like MADS-box protein AGL12, partial [Cucurbita argyrosperma subsp. sororia]1.7e-5088.52Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPP+DNQTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          EVKEEVNRLKQEIEVLKGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

XP_011656111.1 agamous-like MADS-box protein AGL12 [Cucumis sativus]2.5e-4681.97Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKGTMQGLIERYM HTNG+QPP+PPI +QTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          EVKEE+ RLKQEIEVLKGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

XP_022925494.1 agamous-like MADS-box protein AGL12 [Cucurbita moschata]7.6e-5189.34Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          EVKEEVNRLKQEIEVLKGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

XP_022973991.1 agamous-like MADS-box protein AGL12 [Cucurbita maxima]8.4e-5088.52Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEP IDNQTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          EVKEEVNRLKQEIEVLKGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

XP_038891170.1 agamous-like MADS-box protein AGL12 [Benincasa hispida]1.7e-4783.61Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYM HTNG+QPP+PPID+QTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          EVKEE+ RLKQEIEVLKGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

TrEMBL top hitse value%identityAlignment
A0A0A0KW77 Uncharacterized protein1.2e-4681.97Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKGTMQGLIERYM HTNG+QPP+PPI +QTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          EVKEE+ RLKQEIEVLKGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

A0A6J1D898 agamous-like MADS-box protein AGL12 isoform X23.5e-4681.15Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKGTMQGLIERYMNHT+ +QPP+P I+NQTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          E+KEEVNRLKQEIEV KGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

A0A6J1D9I4 agamous-like MADS-box protein AGL12 isoform X13.5e-4681.15Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQ+KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIG+FIFSAHGKLYELATKGTMQGLIERYMNHT+ +QPP+P I+NQTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          E+KEEVNRLKQEIEV KGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

A0A6J1ECC1 agamous-like MADS-box protein AGL123.7e-5189.34Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          EVKEEVNRLKQEIEVLKGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

A0A6J1IA69 agamous-like MADS-box protein AGL124.0e-5088.52Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEP IDNQTL           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKGLR
          EVKEEVNRLKQEIEVLKGLR
Subjt:  SHEVKEEVNRLKQEIEVLKGLR

SwissProt top hitse value%identityAlignment
A2YQK9 MADS-box transcription factor 265.8e-3057.69Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTN------GSQPPEPPIDNQTLVSIIV
        MARGKVQL+RIENPVHRQVTFCKRRAGLLKKA+ELS+LC+A+IG+ IFSAHGKLY+LAT GTM+ LIERY + +       G Q  +P            
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTN------GSQPPEPPIDNQTLVSIIV

Query:  ARVRVLSHEVKEEVNRLKQEIEVL-KGLRY
                  K+E   LKQEI +L KGLRY
Subjt:  ARVRVLSHEVKEEVNRLKQEIEVL-KGLRY

O22328 Agamous-like MADS-box protein AGL8 homolog6.5e-2163.51Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHT
        M RG+VQLKRIEN ++RQVTF KRR+GLLKKA E+SVLCDAE+G+ +FS  GKL+E AT   M+ L+ERY  ++
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHT

Q0J8G8 MADS-box transcription factor 265.8e-3057.69Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTN------GSQPPEPPIDNQTLVSIIV
        MARGKVQL+RIENPVHRQVTFCKRRAGLLKKA+ELS+LC+A+IG+ IFSAHGKLY+LAT GTM+ LIERY + +       G Q  +P            
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTN------GSQPPEPPIDNQTLVSIIV

Query:  ARVRVLSHEVKEEVNRLKQEIEVL-KGLRY
                  K+E   LKQEI +L KGLRY
Subjt:  ARVRVLSHEVKEEVNRLKQEIEVL-KGLRY

Q2QW55 MADS-box transcription factor 333.5e-2752.03Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        M RGKVQ++RIENPVHRQVTFCKRR GLLKKA+ELSVLCDA++GV IFS+ GKL+ELAT G M  L+ERY ++  G Q     +  Q +           
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVL-KGLR
            ++ +  L++EI++L +GLR
Subjt:  SHEVKEEVNRLKQEIEVL-KGLR

Q38841 Agamous-like MADS-box protein AGL121.9e-3361.29Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGK+QLKRIENPVHRQVTFCKRR GLLKKAKELSVLCDAEIGV IFS  GKL+ELATKGTM+G+I++YM  T G +       + +       +++  
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVL-KGLRY
        + + K+E+N LKQEIE+L KG+ Y
Subjt:  SHEVKEEVNRLKQEIEVL-KGLRY

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein3.9e-2145.83Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        M RG+V+LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ + IFS  GKLYE  +  +M   +ERY     G+  PEP + ++  ++ + ++   L
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLKG
          ++KE  + L++    L G
Subjt:  SHEVKEEVNRLKQEIEVLKG

AT1G24260.2 K-box region and MADS-box transcription factor family protein3.9e-2144.54Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        M RG+V+LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ + IFS  GKLYE  +  +M   +ERY     G+  PEP + ++  +++ ++     
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLK
            ++E  +LK+  + L+
Subjt:  SHEVKEEVNRLKQEIEVLK

AT1G24260.3 K-box region and MADS-box transcription factor family protein3.9e-2144.54Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        M RG+V+LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ + IFS  GKLYE  +  +M   +ERY     G+  PEP + ++  +++ ++     
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLK
            ++E  +LK+  + L+
Subjt:  SHEVKEEVNRLKQEIEVLK

AT1G69120.1 K-box region and MADS-box transcription factor family protein2.3e-2145.38Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        M RG+VQLKRIEN ++RQVTF KRRAGLLKKA E+SVLCDAE+ + +FS  GKL+E +T   M+ ++ERY  ++   +              ++A    +
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVLK
        +     E NRLK +IE+L+
Subjt:  SHEVKEEVNRLKQEIEVLK

AT1G71692.1 AGAMOUS-like 121.4e-3461.29Show/hide
Query:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL
        MARGK+QLKRIENPVHRQVTFCKRR GLLKKAKELSVLCDAEIGV IFS  GKL+ELATKGTM+G+I++YM  T G +       + +       +++  
Subjt:  MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVL

Query:  SHEVKEEVNRLKQEIEVL-KGLRY
        + + K+E+N LKQEIE+L KG+ Y
Subjt:  SHEVKEEVNRLKQEIEVL-KGLRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGTGGGAAGGTTCAATTGAAGAGGATTGAGAACCCTGTGCACAGGCAAGTGACGTTCTGCAAGCGCCGAGCTGGGCTCCTTAAGAAGGCTAAGGAGCTGTCTGT
GTTGTGCGATGCTGAAATTGGAGTCTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAACCACA
CCAATGGGAGTCAGCCACCAGAGCCACCAATAGACAACCAAACCCTGGTCTCCATTATCGTTGCTAGGGTTAGAGTGTTAAGTCATGAAGTGAAGGAGGAGGTCAACAGG
CTGAAACAAGAAATTGAAGTCCTAAAGGGTCTCAGGTATAAAGATTTCTTATTCGAATAA
mRNA sequenceShow/hide mRNA sequence
TTAGAGTGGTTTAAGGGCTTGTGAGTTTGAGAGGTTAAGAGAAGTAGAGATATTGCAGCGACCGGAAGCTAGTTCAAACTAGTGGAAGGTTGGGTGCAGAGCAGCTGCTG
CAGAGTTCAAGAAATTGGTTGAAATGGCTCGTGGGAAGGTTCAATTGAAGAGGATTGAGAACCCTGTGCACAGGCAAGTGACGTTCTGCAAGCGCCGAGCTGGGCTCCTT
AAGAAGGCTAAGGAGCTGTCTGTGTTGTGCGATGCTGAAATTGGAGTCTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGCT
TATTGAAAGGTACATGAACCACACCAATGGGAGTCAGCCACCAGAGCCACCAATAGACAACCAAACCCTGGTCTCCATTATCGTTGCTAGGGTTAGAGTGTTAAGTCATG
AAGTGAAGGAGGAGGTCAACAGGCTGAAACAAGAAATTGAAGTCCTAAAGGGTCTCAGGTATAAAGATTTCTTATTCGAATAA
Protein sequenceShow/hide protein sequence
MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPIDNQTLVSIIVARVRVLSHEVKEEVNR
LKQEIEVLKGLRYKDFLFE