; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh09G013410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh09G013410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCmo_Chr09:12162964..12163451
RNA-Seq ExpressionCmoCh09G013410
SyntenyCmoCh09G013410
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0030244 - cellulose biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016760 - cellulose synthase (UDP-forming) activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN72600.1 hypothetical protein VITISV_036712 [Vitis vinifera]4.5e-0673.68Show/hide
Query:  DSGENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES
        D  + YEKKGSE  VYKL K LYGLKQAPR WFSRIE+
Subjt:  DSGENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES

KAA3470482.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Gossypium australe]4.5e-0682.86Show/hide
Query:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES
        + YEKKGSE MVYKLQK LYGLKQA R WFSRIES
Subjt:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES

RVW85317.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.9e-0677.14Show/hide
Query:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES
        + YEKKGSE +VYKL K LYGLKQAPR WFSRIE+
Subjt:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES

XP_022971876.1 uncharacterized protein LOC111470570 [Cucurbita maxima]1.4e-1257.14Show/hide
Query:  MVKGLPQIGAPNT-------------------TW-------ENIEIDKNTSEGGGITEETTEPVDETIELVAENEEGKITEETTKLVAETIESVAENN
        MVKGL +IG PNT                    W       ENIEIDKN  EGGGITEETTE V ETIE V ENEEGKI EE T+ VAETIE VAEN+
Subjt:  MVKGLPQIGAPNT-------------------TW-------ENIEIDKNTSEGGGITEETTEPVDETIELVAENEEGKITEETTKLVAETIESVAENN

XP_023513247.1 uncharacterized protein LOC111777763 [Cucurbita pepo subsp. pepo]1.0e-2160.5Show/hide
Query:  NTTWENIEIDKNTSEGGGITEETTEPVDETI----------------ELVAENEEGKITEETTKLVAETIESVAENNFPVIVALDLTIREGRNRHPPVWL
        N T +NIEIDKNT EGG I EETTEPV ETI                E VAENEEGKITEETT+ VAETIE VAEN F V VA DLTIREGRNRHP VWL
Subjt:  NTTWENIEIDKNTSEGGGITEETTEPVDETI----------------ELVAENEEGKITEETTKLVAETIESVAENNFPVIVALDLTIREGRNRHPPVWL

Query:  A--DSGENYEKKGSEEMVY
           + GE   ++  E M +
Subjt:  A--DSGENYEKKGSEEMVY

TrEMBL top hitse value%identityAlignment
A0A2N9H9R9 Uncharacterized protein3.7e-0681.82Show/hide
Query:  YEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES
        YEKKGSE +VYKL K LYGLKQAPR WFSRIE+
Subjt:  YEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES

A0A438HLL6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-0677.14Show/hide
Query:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES
        + YEKKGSE +VYKL K LYGLKQAPR WFSRIE+
Subjt:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES

A0A5B6VMY9 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-0682.86Show/hide
Query:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES
        + YEKKGSE MVYKLQK LYGLKQA R WFSRIES
Subjt:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES

A0A6J1I4E9 uncharacterized protein LOC1114705707.0e-1357.14Show/hide
Query:  MVKGLPQIGAPNT-------------------TW-------ENIEIDKNTSEGGGITEETTEPVDETIELVAENEEGKITEETTKLVAETIESVAENN
        MVKGL +IG PNT                    W       ENIEIDKN  EGGGITEETTE V ETIE V ENEEGKI EE T+ VAETIE VAEN+
Subjt:  MVKGLPQIGAPNT-------------------TW-------ENIEIDKNTSEGGGITEETTEPVDETIELVAENEEGKITEETTKLVAETIESVAENN

A5BQM4 CCHC-type domain-containing protein2.2e-0673.68Show/hide
Query:  DSGENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES
        D  + YEKKGSE  VYKL K LYGLKQAPR WFSRIE+
Subjt:  DSGENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.7e-0454.29Show/hide
Query:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES
        E +E  G + MV KL K+LYGLKQAPR W+ + +S
Subjt:  ENYEKKGSEEMVYKLQKTLYGLKQAPRTWFSRIES

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAAGGCCTGCCGCAAATTGGAGCTCCAAACACCACCTGGGAAAACATTGAAATTGATAAGAACACATCCGAAGGAGGAGGAATCACAGAGGAAACGACTGAACC
AGTTGATGAAACAATTGAACTAGTTGCTGAAAACGAAGAAGGGAAAATCACGGAAGAAACGACTAAATTGGTTGCTGAAACAATTGAATCAGTTGCTGAAAACAATTTTC
CAGTAATTGTTGCACTAGATTTGACAATAAGGGAGGGGAGAAATCGACATCCACCTGTATGGTTAGCAGATTCCGGTGAAAACTATGAGAAAAAGGGAAGTGAGGAGATG
GTGTACAAACTCCAAAAGACTCTCTACGGATTAAAACAAGCACCTAGAACCTGGTTTAGTCGAATAGAATCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAAGGCCTGCCGCAAATTGGAGCTCCAAACACCACCTGGGAAAACATTGAAATTGATAAGAACACATCCGAAGGAGGAGGAATCACAGAGGAAACGACTGAACC
AGTTGATGAAACAATTGAACTAGTTGCTGAAAACGAAGAAGGGAAAATCACGGAAGAAACGACTAAATTGGTTGCTGAAACAATTGAATCAGTTGCTGAAAACAATTTTC
CAGTAATTGTTGCACTAGATTTGACAATAAGGGAGGGGAGAAATCGACATCCACCTGTATGGTTAGCAGATTCCGGTGAAAACTATGAGAAAAAGGGAAGTGAGGAGATG
GTGTACAAACTCCAAAAGACTCTCTACGGATTAAAACAAGCACCTAGAACCTGGTTTAGTCGAATAGAATCCTAG
Protein sequenceShow/hide protein sequence
MVKGLPQIGAPNTTWENIEIDKNTSEGGGITEETTEPVDETIELVAENEEGKITEETTKLVAETIESVAENNFPVIVALDLTIREGRNRHPPVWLADSGENYEKKGSEEM
VYKLQKTLYGLKQAPRTWFSRIES