; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G001020 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G001020
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionATP-dependent RNA helicase
Genome locationCmo_Chr10:438031..439518
RNA-Seq ExpressionCmoCh10G001020
SyntenyCmoCh10G001020
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR001650 - Helicase, C-terminal
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589422.1 DEAD-box ATP-dependent RNA helicase 30, partial [Cucurbita argyrosperma subsp. sororia]1.7e-5498.23Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSS TGGSSSKYRPQGHRGFGGNRTMVSGP
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGLTRPRPR
        NAIPIGLTRPRPR
Subjt:  NAIPIGLTRPRPR

KAG7023100.1 DEAD-box ATP-dependent RNA helicase 30, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-5498.23Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSS TGGSSSKYRPQGHRGFGGNRTMVSGP
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGLTRPRPR
        NAIPIGLTRPRPR
Subjt:  NAIPIGLTRPRPR

XP_022965035.1 DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita moschata]3.4e-5599.12Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGLTRPRPR
        NAIPIGLTRPRPR
Subjt:  NAIPIGLTRPRPR

XP_022987231.1 DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita maxima]3.8e-5497.35Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALA+SS TGGSSSKYRPQGHRGFGGNRTMVSGP
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGLTRPRPR
        NAIPIGLTRPRPR
Subjt:  NAIPIGLTRPRPR

XP_023516950.1 DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita pepo subsp. pepo]1.7e-5498.23Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSS TGGSSSKYRPQGHRGFGGNRTMVSGP
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGLTRPRPR
        NAIPIGLTRPRPR
Subjt:  NAIPIGLTRPRPR

TrEMBL top hitse value%identityAlignment
A0A0A0LP25 Helicase C-terminal domain-containing protein5.3e-4688.39Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        NVKDIKCVIN+DFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHAR+LIKILREAGQIV+PALSALASSSG GGS +K+R QGHRG  GNRTMVSG 
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGL-TRPR
        NAIP+GL TRPR
Subjt:  NAIPIGL-TRPR

A0A5A7URR2 DEAD-box ATP-dependent RNA helicase 20 isoform X19.1e-4687.5Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHAR+LIKILREAGQIV+PALS LASSSG GGS +K+RPQGHRG  G+RTMVSG 
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGL-TRPR
        NAIP+GL TRPR
Subjt:  NAIPIGL-TRPR

A0A5D3BJX7 DEAD-box ATP-dependent RNA helicase 20 isoform X19.1e-4687.5Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHAR+LIKILREAGQIV+PALS LASSSG GGS +K+RPQGHRG  G+RTMVSG 
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGL-TRPR
        NAIP+GL TRPR
Subjt:  NAIPIGL-TRPR

A0A6J1HMK2 DEAD-box ATP-dependent RNA helicase 20-like1.7e-5599.12Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGLTRPRPR
        NAIPIGLTRPRPR
Subjt:  NAIPIGLTRPRPR

A0A6J1JDK6 DEAD-box ATP-dependent RNA helicase 20-like1.8e-5497.35Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALA+SS TGGSSSKYRPQGHRGFGGNRTMVSGP
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGLTRPRPR
        NAIPIGLTRPRPR
Subjt:  NAIPIGLTRPRPR

SwissProt top hitse value%identityAlignment
G0SFM2 ATP-dependent RNA helicase DBP26.5e-2556.64Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSS--SKYRPQGHRGF-GGNRTMV
        +V++I  VINYD+P++ EDY+HRIGRTGRAGAKGTA TFFT ENAK AR+L+ +L+EA Q V P L  +A  SG GGSS    YR +G  G+ GG+R+  
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSS--SKYRPQGHRGF-GGNRTMV

Query:  -SGPNAIPIGLTR
         SG NA+P+   R
Subjt:  -SGPNAIPIGLTR

Q2H720 ATP-dependent RNA helicase DBP22.5e-2451.79Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSS--SKYRPQGHRGFGGNRTM-V
        +V++I  V+NYD+P++ EDY+HRIGRTGRAGAKGTA TFFT +N+K AR+L+ +L+EA Q + P L+ +    G GG+S    YR +G  GF G R+   
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSS--SKYRPQGHRGFGGNRTM-V

Query:  SGPNAIPIGLTR
        +GPNA+P+G  R
Subjt:  SGPNAIPIGLTR

Q5N7W4 DEAD-box ATP-dependent RNA helicase 306.7e-3063.64Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
        +VKDIKCVIN+DFP++LEDY+HRIGRTGRAGA GTAFTFFT  NAK +R L+KILREAGQ+V+PAL ++A S+ + G  + +R +G  GF GNR   SG 
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP

Query:  NAIPIGLTRP
        N+IPI   RP
Subjt:  NAIPIGLTRP

Q5QMN3 DEAD-box ATP-dependent RNA helicase 209.4e-2463.16Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRT
        +VKD+K VINYDFP SLEDYVHRIGRTGRAGAKGTA+TFFT  NA+ A++LI IL EAGQ VSP L+ +    G    SS +R + +RG+GG R+
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRT

Q8W4R3 DEAD-box ATP-dependent RNA helicase 303.6e-3164.29Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTG----GSSSKYRPQ-GHRGFG-GNR
        +VKDIKCV+NYDFP++LEDY+HRIGRTGRAGAKG AFTFFTH+NAK AREL+KIL+EAGQ+V P LSAL  SSG+G    G    +RP+ G RG G G++
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTG----GSSSKYRPQ-GHRGFG-GNR

Query:  TMVSGPNAIPIG
           S  N +P G
Subjt:  TMVSGPNAIPIG

Arabidopsis top hitse value%identityAlignment
AT1G55150.1 DEA(D/H)-box RNA helicase family protein7.4e-2462.37Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSS-----GTGGSSSKYRPQGHR
        +VKD+K VINYDFP SLEDYVHRIGRTGRAGAKGTA+TFFT  NA+ A+EL  IL+EAGQ VSP L+++  S+     G GG    +R +G R
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSS-----GTGGSSSKYRPQGHR

AT3G01540.1 DEAD box RNA helicase 12.0e-2156.25Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYR---PQGHRGFGGN
        +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G AFTFF  +++KHA +LIKIL  A Q V P +  +A+  G GG +   R   P G RG GG+
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYR---PQGHRGFGGN

AT3G01540.2 DEAD box RNA helicase 12.0e-2156.25Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYR---PQGHRGFGGN
        +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G AFTFF  +++KHA +LIKIL  A Q V P +  +A+  G GG +   R   P G RG GG+
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYR---PQGHRGFGGN

AT3G01540.3 DEAD box RNA helicase 12.0e-2156.25Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYR---PQGHRGFGGN
        +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G AFTFF  +++KHA +LIKIL  A Q V P +  +A+  G GG +   R   P G RG GG+
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYR---PQGHRGFGGN

AT5G63120.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.5e-3264.29Show/hide
Query:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTG----GSSSKYRPQ-GHRGFG-GNR
        +VKDIKCV+NYDFP++LEDY+HRIGRTGRAGAKG AFTFFTH+NAK AREL+KIL+EAGQ+V P LSAL  SSG+G    G    +RP+ G RG G G++
Subjt:  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTG----GSSSKYRPQ-GHRGFG-GNR

Query:  TMVSGPNAIPIG
           S  N +P G
Subjt:  TMVSGPNAIPIG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTTTATGAACACTAATGATGTAAATCCTGTCTATCAATGGGTCAGTAAGGATAGTGAGAAGGTAGAGACTTTGATGAGTAAGGTGCCTGAGATTTTGGTCCTCTA
TAGTTATCCGAGCATTCTATTGGTACCCATCCACAATTATGGAGCTGGTTGTTTTGTAGCCTGGTTGACTCATTCATTATTGCATTGTTGGTATGGAAGTCGTCGTGGTG
ACAGCTGCTACTTATCCCTGCAAAATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGATTATGTCCACAGAATAGGCCGAACGGGGCGT
GCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGCCAGAGAGCTTATAAAGATACTGCGAGAAGCAGGGCAGATCGTCTCCCCTGCATT
GTCTGCTTTAGCCTCGTCTAGTGGCACTGGAGGTTCTAGCTCTAAATACCGCCCTCAAGGTCACAGAGGCTTTGGTGGTAACCGAACAATGGTTTCAGGACCAAATGCGA
TCCCTATTGGTTTGACGAGACCAAGGCCTCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGTTTATGAACACTAATGATGTAAATCCTGTCTATCAATGGGTCAGTAAGGATAGTGAGAAGGTAGAGACTTTGATGAGTAAGGTGCCTGAGATTTTGGTCCTCTA
TAGTTATCCGAGCATTCTATTGGTACCCATCCACAATTATGGAGCTGGTTGTTTTGTAGCCTGGTTGACTCATTCATTATTGCATTGTTGGTATGGAAGTCGTCGTGGTG
ACAGCTGCTACTTATCCCTGCAAAATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGATTATGTCCACAGAATAGGCCGAACGGGGCGT
GCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGCCAGAGAGCTTATAAAGATACTGCGAGAAGCAGGGCAGATCGTCTCCCCTGCATT
GTCTGCTTTAGCCTCGTCTAGTGGCACTGGAGGTTCTAGCTCTAAATACCGCCCTCAAGGTCACAGAGGCTTTGGTGGTAACCGAACAATGGTTTCAGGACCAAATGCGA
TCCCTATTGGTTTGACGAGACCAAGGCCTCGCTAGCTTTTCGCACGAGTTGGAAGGAAGCATATAAGCTAGATAAGTAGTGTATTTCAGAAATGTGGACCATTTTCATTG
TGTAGTATAGTTTGAGTTATTACTAGAATAGCAATTTAGTATTGTTTGGTATGAAAAATGGACATGTGGGCATATGTGTATATAAAACCAGATTACTGGTAGACATTGCT
GAGGGTGTTTGTATTAGGTCTGGTGGTTGTTGGGTTGGTGAAGGTGAAGGTGAAGAAGAAAGAAAATGAGAAGCCTATGGCTATTTTTCCCAACCTCTTCAAATTGTGAT
TTGATTTTGATTAAGCTTACATAACCTTAGAGGGCCCCTTTACCTTTAGTACTTCATAAGGATAATTTCATTTTAGGTAAAGAATTTATTTGGATCTCTCCCTCCTATTT
GTGTTGTAAACCAGACAAAAGGCCTTCATTCATTTAGAGTATTCTTCATAATACGACTGCTGTCCTTTGCTTCTTTCTGCATAGCATCCGCCTTCCGAACAAGGCATACA
CATTTTCCTCTTTAGGCTGTTTCTCTTGGAAGTTTTTAAAATGCGCATGTTAGGAGATGTTAAGTGAAGGGTTTCTAAATGATTCGTTTTCTTCTAGGATCTCCACAATC
CCCGCCCCCTTCGAGGCCTA
Protein sequenceShow/hide protein sequence
MLFMNTNDVNPVYQWVSKDSEKVETLMSKVPEILVLYSYPSILLVPIHNYGAGCFVAWLTHSLLHCWYGSRRGDSCYLSLQNVKDIKCVINYDFPSSLEDYVHRIGRTGR
AGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR