; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G001430 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G001430
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNHL domain-containing protein
Genome locationCmo_Chr10:659816..661939
RNA-Seq ExpressionCmoCh10G001430
SyntenyCmoCh10G001430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589457.1 hypothetical protein SDJN03_14880, partial [Cucurbita argyrosperma subsp. sororia]4.2e-8996.41Show/hide
Query:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG
        MAYPDAEEPPPCE  NSNSLLPTTRCGCFRLSCLE RRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGG G
Subjt:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG

Query:  A-GRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
        A GRPGKF YDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Subjt:  A-GRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

KAG7023141.1 hypothetical protein SDJN02_14166, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-8893.57Show/hide
Query:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG
        MAYPDAEEPPPCE  NSNSLLPTTRCGCFRLSCLE RRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGG G
Subjt:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG

Query:  -----AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
              GRPGKF YDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Subjt:  -----AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

XP_022921694.1 uncharacterized protein LOC111429865 [Cucurbita moschata]7.4e-94100Show/hide
Query:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG
        MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG
Subjt:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG

Query:  AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
        AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Subjt:  AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

XP_022988416.1 uncharacterized protein LOC111485666 [Cucurbita maxima]2.1e-8894.15Show/hide
Query:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG
        MAYPDAEEPPP E DNSNSLLPTTRCGCFRLSCLE RRAVAVGPSWWERIR SQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGG G
Subjt:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG

Query:  -----AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
             AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Subjt:  -----AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

XP_023516338.1 uncharacterized protein LOC111780229 [Cucurbita pepo subsp. pepo]7.9e-8892.98Show/hide
Query:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG
        MAYPDAEEPPPCE D+SNSLLPTTRCGCFRLSCLE RRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNG  G
Subjt:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG

Query:  -----AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
             AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIP PLKTGG TGKDISTVA
Subjt:  -----AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

TrEMBL top hitse value%identityAlignment
A0A1S3BVG0 uncharacterized protein LOC1034939214.1e-7482.25Show/hide
Query:  DAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAG--
        D EE P CE D SNSLLPT RCGCFRLSC   RR   VGPSWWERIRASQVHSEGRWWARGV+VILK+REWSEIVAGPRWKTFIRRFNRNR+GG G G  
Subjt:  DAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAG--

Query:  -----RPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
             R GKFQYDPLSYAMNFDEGSRQIGELDDD DDFNGYRNFSARYASIPAPLKTGGT  KD+S VA
Subjt:  -----RPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

A0A5A7UWM1 Putative Serine/arginine repetitive matrix protein 27.0e-7481.29Show/hide
Query:  DAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAG--
        D EE P CE D SNSLLPT RCGCFRLSC   RR   VGPSWWERIRASQVHSEGRWWARGV+VILK+REWSEIVAGPRWKTFIRRFNRNR+GG G G  
Subjt:  DAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAG--

Query:  -------RPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
               R GKFQYDPLSYAMNFDEGSRQIGELDDD DDFNGYRNFSARYASIPAPLKTGGT  KD+S VA
Subjt:  -------RPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

A0A5D3BK38 Putative Serine/arginine repetitive matrix protein 24.1e-7482.25Show/hide
Query:  DAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAG--
        D EE P CE D SNSLLPT RCGCFRLSC   RR   VGPSWWERIRASQVHSEGRWWARGV+VILK+REWSEIVAGPRWKTFIRRFNRNR+GG G G  
Subjt:  DAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAG--

Query:  -----RPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
             R GKFQYDPLSYAMNFDEGSRQIGELDDD DDFNGYRNFSARYASIPAPLKTGGT  KD+S VA
Subjt:  -----RPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

A0A6J1E188 uncharacterized protein LOC1114298653.6e-94100Show/hide
Query:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG
        MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG
Subjt:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG

Query:  AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
        AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Subjt:  AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

A0A6J1JH52 uncharacterized protein LOC1114856661.0e-8894.15Show/hide
Query:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG
        MAYPDAEEPPP E DNSNSLLPTTRCGCFRLSCLE RRAVAVGPSWWERIR SQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGG G
Subjt:  MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG

Query:  -----AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
             AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Subjt:  -----AGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)4.5e-2540.12Show/hide
Query:  EEPPPCEVDNSNSL---LPTTRCGCFRLSCLEFRRAVAVGPS-WWERI-RASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNR--------
        + PP  EVD ++ +   L   R  CF + CL   +    G S WW+RI    ++  + RWW RG R   ++REWSE+VAGPRWKT+IRRF R        
Subjt:  EEPPPCEVDNSNSL---LPTTRCGCFRLSCLEFRRAVAVGPS-WWERI-RASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNR--------

Query:  ----NRNGGAGAGR-------PGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKT
            N +GG G G         GKF+YD LSY++NFD+G+ Q G  DD+      YR++S R+A+   P+ T
Subjt:  ----NRNGGAGAGR-------PGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKT

AT3G48020.1 unknown protein1.4e-2647.45Show/hide
Query:  EVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAGRPGKFQYDPL
        EV  +N LL  + C      C     +  V  SWW+RI  +  H E RWW   VR  LKIREWSEIVAGPRWKTFIRRFNR+   G       KF+YDP+
Subjt:  EVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAGRPGKFQYDPL

Query:  SYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIP
        SY ++F++  +     DDD     G R+FS RYAS+P
Subjt:  SYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIP

AT5G14890.1 NHL domain-containing protein1.5e-2338.6Show/hide
Query:  SKTHRYSPIMAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCL-EFRRAVAVGPSWWERIR-ASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIR
        +++H +  + ++P +E       D  +  +   R  CF L CL   + +   G  WW+RIR   ++  + RWW  G    +K+REWSEIVAGP+WKTFIR
Subjt:  SKTHRYSPIMAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCL-EFRRAVAVGPSWWERIR-ASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIR

Query:  RFNRNR--NGG--AGAGRPG--KFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKT
        RF RN   NGG   G  RP    F+YD  SY++NFD+G +Q G  +D+      YR++S R+A+   P+ T
Subjt:  RFNRNR--NGG--AGAGRPG--KFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKT

AT5G25240.1 unknown protein4.7e-0635.05Show/hide
Query:  CGCFR-LSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAGRPGKFQYDPLSYAMNFDEG
        CG FR  S   +RR      S        Q    G W   G   +  ++E SE +AGP+WK FIR F+   +G     R   F YD  +Y++NFD+G
Subjt:  CGCFR-LSCLEFRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAGRPGKFQYDPLSYAMNFDEG

AT5G62865.1 unknown protein5.4e-2651.11Show/hide
Query:  RCGCFRLSCLEFRRAVAVGPSWWERIRA--SQVHS-----EGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAGRPGKFQYDPLSYAMN
        RC CF  S    R + AVG S W RIR      HS     E RWW   +R  LKIREWSEIVAGPRWKTFIRRFNR+   G       KFQYDPLSY++N
Subjt:  RCGCFRLSCLEFRRAVAVGPSWWERIRA--SQVHS-----EGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAGRPGKFQYDPLSYAMN

Query:  FDEGSRQIGELDDDNDDF---NGYRNFSARYASIP
        FD+        DD+ D++    G R+FS R+AS+P
Subjt:  FDEGSRQIGELDDDNDDF---NGYRNFSARYASIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCACTAGCAGTAAGCGCTCGGGGAATTCATTCGTCACTTTGGAAATCAAATTCAGTGTATTCTCCTTGCTGATTGCTTCAACCCAACACAAAGGCTCCATGGCCTT
GCCAGGTGTATTCTACGGTCACAAAGTTGGTGATGCTTTCAGTAAAACCCATCGGTACAGTCCGATAATGGCGTATCCAGATGCAGAAGAGCCTCCTCCTTGCGAAGTGG
ATAATTCCAATTCTTTGTTGCCGACCACCAGGTGCGGCTGTTTCCGGTTATCGTGCTTGGAATTTCGCCGTGCGGTAGCCGTCGGGCCATCATGGTGGGAGAGGATTAGG
GCGTCGCAGGTTCACAGCGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTATATTGAAGATCCGAGAGTGGTCTGAGATAGTCGCTGGACCGAGATGGAAGACTTTCAT
TCGCCGATTTAACCGGAATCGGAACGGTGGTGCTGGTGCTGGTAGGCCTGGGAAATTTCAATACGATCCGTTGAGTTACGCTATGAATTTTGATGAAGGTTCGAGGCAGA
TTGGGGAATTAGACGACGATAATGACGACTTCAATGGGTATCGGAACTTCTCTGCTCGTTACGCTTCAATACCGGCGCCGTTGAAGACCGGAGGAACAACTGGGAAGGAT
ATATCTACCGTCGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCACTAGCAGTAAGCGCTCGGGGAATTCATTCGTCACTTTGGAAATCAAATTCAGTGTATTCTCCTTGCTGATTGCTTCAACCCAACACAAAGGCTCCATGGCCTT
GCCAGGTGTATTCTACGGTCACAAAGTTGGTGATGCTTTCAGTAAAACCCATCGGTACAGTCCGATAATGGCGTATCCAGATGCAGAAGAGCCTCCTCCTTGCGAAGTGG
ATAATTCCAATTCTTTGTTGCCGACCACCAGGTGCGGCTGTTTCCGGTTATCGTGCTTGGAATTTCGCCGTGCGGTAGCCGTCGGGCCATCATGGTGGGAGAGGATTAGG
GCGTCGCAGGTTCACAGCGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTATATTGAAGATCCGAGAGTGGTCTGAGATAGTCGCTGGACCGAGATGGAAGACTTTCAT
TCGCCGATTTAACCGGAATCGGAACGGTGGTGCTGGTGCTGGTAGGCCTGGGAAATTTCAATACGATCCGTTGAGTTACGCTATGAATTTTGATGAAGGTTCGAGGCAGA
TTGGGGAATTAGACGACGATAATGACGACTTCAATGGGTATCGGAACTTCTCTGCTCGTTACGCTTCAATACCGGCGCCGTTGAAGACCGGAGGAACAACTGGGAAGGAT
ATATCTACCGTCGCGTAA
Protein sequenceShow/hide protein sequence
MITSSKRSGNSFVTLEIKFSVFSLLIASTQHKGSMALPGVFYGHKVGDAFSKTHRYSPIMAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIR
ASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAGAGRPGKFQYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKD
ISTVA