; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G001780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G001780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDynein light chain, type 1/2
Genome locationCmo_Chr10:805926..806984
RNA-Seq ExpressionCmoCh10G001780
SyntenyCmoCh10G001780
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589483.1 Dynein light chain, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]2.8e-9295.41Show/hide
Query:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI
        MASHETSSSIDPNRRNHP    AASVVTLAAVSPNPTS KLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAP E STTEKFN+SEE+FERMI
Subjt:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI

Query:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
        NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
Subjt:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK

KAG7023168.1 Dynein light chain, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]1.8e-9497.45Show/hide
Query:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI
        MASHETSSSIDPNRRNHP    AASVVTLAAVSPNPTS KLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI
Subjt:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI

Query:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
        NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
Subjt:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK

XP_022921489.1 uncharacterized protein LOC111429742 [Cucurbita moschata]3.4e-98100Show/hide
Query:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI
        MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI
Subjt:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI

Query:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
        NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
Subjt:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK

XP_023516401.1 uncharacterized protein LOC111780277 [Cucurbita pepo subsp. pepo]3.9e-9497.45Show/hide
Query:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI
        MASHETSSSIDPNRRNHP  AAAASVVTLAAVSPNPTS KLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAP E STTEKFNDSEEKFERMI
Subjt:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI

Query:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
        NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
Subjt:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK

XP_038879954.1 uncharacterized protein LOC120071657 [Benincasa hispida]3.7e-7680.95Show/hide
Query:  MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS-----------PKMVGPRTVQMVAKKPNEAPLERSTT
        MASH TSS   S+DP+RRN P AAAA  VVT A VSP+PTS KLDP TPLSDSD LSKS+PPS           PKMVGP TVQ VAKKPNE P E STT
Subjt:  MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS-----------PKMVGPRTVQMVAKKPNEAPLERSTT

Query:  EKFNDSEEKFERMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFT
        EKFNDSEE++ERMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSG RR+SIC SQI+LADVFANNGVKVVSADMPPFMQIHAVDCARK HDSMEKFT
Subjt:  EKFNDSEEKFERMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFT

Query:  SKSLALTLKK
        SKSLALTLKK
Subjt:  SKSLALTLKK

TrEMBL top hitse value%identityAlignment
A0A0A0LPA2 Uncharacterized protein1.5e-7080.4Show/hide
Query:  MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFE
        MA+H T+S   S+DP+ RN P  AA A VVT A VSP+PTS KLD  TPLSDSD LSKS PPSP  VGPRT Q VAK PNE P E STTEKFN SEE+FE
Subjt:  MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFE

Query:  RMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
         MINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSG RRRS  GSQI+L DVFA NGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
Subjt:  RMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK

A0A1S3BVI8 uncharacterized protein LOC1034939571.5e-7079.4Show/hide
Query:  MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFE
        MA+H T+S   S+DP+ RN P  AA A VVT A VSP+PTS KLDP TPLSDSD LSKSHPPSP  VGPRT Q VAKK NE P E +TTEKFN SEE+FE
Subjt:  MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFE

Query:  RMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
         MINCITAKEREMKQLLKEHEH+TRRLS+SLSSSRSG RRRS  GSQI+L DVFA NG KVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
Subjt:  RMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK

A0A5A7UPX5 Dynein light chain, type 1/21.5e-7079.4Show/hide
Query:  MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFE
        MA+H T+S   S+DP+ RN P  AA A VVT A VSP+PTS KLDP TPLSDSD LSKSHPPSP  VGPRT Q VAKK NE P E +TTEKFN SEE+FE
Subjt:  MASHETSS---SIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFE

Query:  RMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
         MINCITAKEREMKQLLKEHEH+TRRLS+SLSSSRSG RRRS  GSQI+L DVFA NG KVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
Subjt:  RMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK

A0A6J1E0M2 uncharacterized protein LOC1114297421.7e-98100Show/hide
Query:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI
        MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI
Subjt:  MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMI

Query:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
        NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK
Subjt:  NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKK

A0A6J1EZR5 uncharacterized protein LOC1114408483.3e-7068.09Show/hide
Query:  MASHETS--------SSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS-----------PKMVGPRTVQMVAKKPNEAPL
        MASH+TS        S +D +RR  P   AAA+     AVSP+PTS KLDP TPLSDSD LSKSHPPS           PKMVGPRTV  +AKKPNE P 
Subjt:  MASHETS--------SSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPS-----------PKMVGPRTVQMVAKKPNEAPL

Query:  ERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDS
        + STTEKFNDSEEKFERMINCIT KEREMKQLL +H+HLTRRLSVSLSSSRSG RR+SICGSQI+LA++FANNGVKVVSADMPPFMQIHAVDCARKAHDS
Subjt:  ERSTTEKFNDSEEKFERMINCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDS

Query:  MEKFTSKSLALTLKKGHFVQNVDLGWLNLAGIRWG
        M+ FTSKSLAL+LK+  F  +    W  + G  +G
Subjt:  MEKFTSKSLALTLKKGHFVQNVDLGWLNLAGIRWG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G20110.1 Dynein light chain type 1 family protein1.3e-0745.9Show/hide
Query:  VKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKGHFVQNVDLGWLNLAGIRWG
        V++++ADMP FMQ HA  CAR   DS+EKF+SK +A  LKK  F +     W  + G  +G
Subjt:  VKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKGHFVQNVDLGWLNLAGIRWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTCACGAAACTTCCTCATCCATCGACCCCAACCGTAGAAACCATCCCGCCGCCGCCGCCGCCGCCTCCGTCGTCACTCTCGCCGCTGTCTCTCCCAACCCAAC
ATCATCAAAACTAGATCCCATAACCCCTTTGTCGGACTCAGACAAGTTGTCAAAATCACACCCACCTTCCCCCAAAATGGTCGGCCCCAGAACAGTGCAAATGGTAGCCA
AAAAACCCAACGAAGCCCCTCTGGAACGCTCTACCACAGAGAAATTCAACGACTCTGAAGAGAAATTCGAACGCATGATCAACTGTATCACAGCCAAAGAAAGGGAAATG
AAGCAGCTCCTAAAGGAACATGAACATCTCACTCGCAGGCTCTCTGTTTCTCTTTCTTCATCACGGAGTGGAAGAAGAAGAAGATCAATCTGTGGCTCACAGATTGAATT
AGCAGACGTGTTTGCTAACAACGGTGTCAAAGTGGTTTCGGCCGACATGCCGCCGTTTATGCAGATCCACGCTGTCGATTGCGCTAGAAAAGCCCACGATAGTATGGAAA
AGTTCACTTCCAAATCCCTTGCATTGACTCTCAAGAAGGGTCATTTTGTTCAGAATGTTGATTTGGGTTGGCTGAATTTGGCAGGAATTCGATGGGGTTTACGGGCCGGC
ATGGCATTGTATTGTGGGGAAGAGTTTTGGGTCCTTTGTGACACACTCAGTGGGTGGATTTCTGTACTTCTCCATGGCTCAAAAGCTTTACATCCTGCTCTTCAAAACCA
CTGTACAAAGAGCCAATTAGAAACACTCAATCGCTGA
mRNA sequenceShow/hide mRNA sequence
TTTTTTTATGGAATTCCATTGGTTTGGTTTTTTTTTTTTTTTGAAATTTAAAAACTAAAATAGAACAATAAATTCAGTGGTCAATTTCGATAAGGGACTGTGTCTGCAGA
AGCAGTTAAGTTAGATTGACCATCAACAGCCCCATATCTCACCCACACGACTACCCACCACCCTCTGCATTCCCAAGCTCTCAATCTCACAAATCCATGGCTTCTCACGA
AACTTCCTCATCCATCGACCCCAACCGTAGAAACCATCCCGCCGCCGCCGCCGCCGCCTCCGTCGTCACTCTCGCCGCTGTCTCTCCCAACCCAACATCATCAAAACTAG
ATCCCATAACCCCTTTGTCGGACTCAGACAAGTTGTCAAAATCACACCCACCTTCCCCCAAAATGGTCGGCCCCAGAACAGTGCAAATGGTAGCCAAAAAACCCAACGAA
GCCCCTCTGGAACGCTCTACCACAGAGAAATTCAACGACTCTGAAGAGAAATTCGAACGCATGATCAACTGTATCACAGCCAAAGAAAGGGAAATGAAGCAGCTCCTAAA
GGAACATGAACATCTCACTCGCAGGCTCTCTGTTTCTCTTTCTTCATCACGGAGTGGAAGAAGAAGAAGATCAATCTGTGGCTCACAGATTGAATTAGCAGACGTGTTTG
CTAACAACGGTGTCAAAGTGGTTTCGGCCGACATGCCGCCGTTTATGCAGATCCACGCTGTCGATTGCGCTAGAAAAGCCCACGATAGTATGGAAAAGTTCACTTCCAAA
TCCCTTGCATTGACTCTCAAGAAGGGTCATTTTGTTCAGAATGTTGATTTGGGTTGGCTGAATTTGGCAGGAATTCGATGGGGTTTACGGGCCGGCATGGCATTGTATTG
TGGGGAAGAGTTTTGGGTCCTTTGTGACACACTCAGTGGGTGGATTTCTGTACTTCTCCATGGCTCAAAAGCTTTACATCCTGCTCTTCAAAACCACTGTACAAAGAGCC
AATTAGAAACACTCAATCGCTGA
Protein sequenceShow/hide protein sequence
MASHETSSSIDPNRRNHPAAAAAASVVTLAAVSPNPTSSKLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERMINCITAKEREM
KQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQIELADVFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKGHFVQNVDLGWLNLAGIRWGLRAG
MALYCGEEFWVLCDTLSGWISVLLHGSKALHPALQNHCTKSQLETLNR