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CmoCh10G001870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G001870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At1g74750-like
Genome locationCmo_Chr10:853163..855287
RNA-Seq ExpressionCmoCh10G001870
SyntenyCmoCh10G001870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9606274.1 hypothetical protein IFM89_024183 [Coptis chinensis]7.2e-0551.61Show/hide
Query:  FKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTV---LTINCLGK
        +K QEAG EPD VTYCTLIDIH+K+  LD+    M   KR+   R+   T    + INCLGK
Subjt:  FKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTV---LTINCLGK

KAG7023176.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-27100Show/hide
Query:  EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI
        EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI
Subjt:  EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI

XP_022921918.1 pentatricopeptide repeat-containing protein At1g74750-like [Cucurbita moschata]3.9e-2798.41Show/hide
Query:  QEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI
        +EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI
Subjt:  QEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI

XP_042512243.1 pentatricopeptide repeat-containing protein At1g18900-like isoform X1 [Macadamia integrifolia]4.2e-0545.16Show/hide
Query:  GYPFKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        G  ++ QEAG EPD VTYCTLIDIH+K+  LD+  +  R  + +          + INCLGK
Subjt:  GYPFKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

XP_042512246.1 pentatricopeptide repeat-containing protein At1g18900-like isoform X2 [Macadamia integrifolia]4.2e-0545.16Show/hide
Query:  GYPFKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        G  ++ QEAG EPD VTYCTLIDIH+K+  LD+  +  R  + +          + INCLGK
Subjt:  GYPFKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

TrEMBL top hitse value%identityAlignment
A0A2G5D9L3 Smr domain-containing protein7.8e-0545.76Show/hide
Query:  FKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        +K QE G EPD VTYCTLIDIH+K+  LD   +  R  +            + INCLGK
Subjt:  FKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

A0A5N6RSC0 Smr domain-containing protein6.0e-0554.24Show/hide
Query:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTV-LTINCLGK
        + QEAG EPD VTYCTLIDIH+KS  LD+   CM    + A L     T  + INCLGK
Subjt:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTV-LTINCLGK

A0A6J1E552 pentatricopeptide repeat-containing protein At1g74750-like1.9e-2798.41Show/hide
Query:  QEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI
        +EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI
Subjt:  QEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI

A0A6P5EZZ7 pentatricopeptide repeat-containing protein At1g18900-like isoform X17.8e-0546.55Show/hide
Query:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        + QEAG EPD VTYCTLIDIH+K+  LDI  +  R  + +          + +NCLGK
Subjt:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

A0A7J6WRU8 Pentatricopeptide repeat-containing protein7.8e-0545.76Show/hide
Query:  FKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        +K QE G EPD VTYCTLIDIH+K+  LD   +  R  +            + INCLGK
Subjt:  FKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

SwissProt top hitse value%identityAlignment
Q8GYP6 Pentatricopeptide repeat-containing protein At1g189005.2e-0644.83Show/hide
Query:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        + QEAG +PD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Subjt:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

Q9SSF9 Pentatricopeptide repeat-containing protein At1g747506.1e-0746.55Show/hide
Query:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        + QEAG EPD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Subjt:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

Arabidopsis top hitse value%identityAlignment
AT1G18900.1 Pentatricopeptide repeat (PPR) superfamily protein3.7e-0744.83Show/hide
Query:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        + QEAG +PD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Subjt:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

AT1G18900.2 Pentatricopeptide repeat (PPR) superfamily protein3.7e-0744.83Show/hide
Query:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        + QEAG +PD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Subjt:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

AT1G18900.3 Pentatricopeptide repeat (PPR) superfamily protein3.7e-0744.83Show/hide
Query:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        + QEAG +PD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Subjt:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK

AT1G74750.1 Pentatricopeptide repeat (PPR) superfamily protein4.4e-0846.55Show/hide
Query:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK
        + QEAG EPD VTYCTLIDIH+K+  LDI  +  +  +            + INCLGK
Subjt:  KFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCCACAGCTCTAATCCATGGTTACCCATTCAAGTTTCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTG
CACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAA
CGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG
mRNA sequenceShow/hide mRNA sequence
TCGTAGGAAAAAAGCTGGACAGGCTGAGGTGAAAAAAATGCGGAGATGGGTGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCCACAGCTCTAATCCATGGTTACCCATT
CAAGTTTCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGAT
GCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG
Protein sequenceShow/hide protein sequence
MGEGSAASLSLRSTALIHGYPFKFQEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI