; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G002540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G002540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAT-rich interactive domain protein
Genome locationCmo_Chr10:1129938..1131369
RNA-Seq ExpressionCmoCh10G002540
SyntenyCmoCh10G002540
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589553.1 hypothetical protein SDJN03_14976, partial [Cucurbita argyrosperma subsp. sororia]1.9e-10199.49Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD
        MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEE+NRMAEIAENAGVAFD
Subjt:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD

Query:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
        VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
Subjt:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE

XP_022134616.1 uncharacterized protein LOC111006843 [Momordica charantia]1.7e-8686.14Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEI------AEN
        MALTITNGGA  G+GGGILYRTST+ PSNQ L RRNALF PS EARTLHVV +KKSSFR GR DSKNRRSST+TKEQEE +EEE+NRMAEI       EN
Subjt:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEI------AEN

Query:  AGVAFDVDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPS
        AGVAFDVDENLPELPGLQPDFWEG +WDPLGFFLEYLWAFGIAFA+IACGIAVTTYNEGATDFKDTPAYKESVQTQE+LEEPEASNPDVFESNPTEVAPS
Subjt:  AGVAFDVDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPS

Query:  LE
        LE
Subjt:  LE

XP_022922065.1 uncharacterized protein LOC111430129 [Cucurbita moschata]6.4e-102100Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD
        MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD
Subjt:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD

Query:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
        VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
Subjt:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE

XP_022987248.1 uncharacterized protein LOC111484859 [Cucurbita maxima]1.6e-10098.47Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD
        MALTITNGGATCGTGGGILYRTSTRTPSNQ LFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQ+EEE+NRMAEIAENAGVAFD
Subjt:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD

Query:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
        VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
Subjt:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE

XP_023515371.1 uncharacterized protein LOC111779544 [Cucurbita pepo subsp. pepo]2.3e-9997.45Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD
        MALTITNGGA CGTGGGILYRTSTRTPSNQ LFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSST TKEQEEQQE+E+NRMAEIAENAGVAFD
Subjt:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD

Query:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
        VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
Subjt:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE

TrEMBL top hitse value%identityAlignment
A0A1S3BW57 uncharacterized protein LOC1034941206.7e-8182.27Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRT-PSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMA------EIAE
        M LTITNGGAT GT GGILYRT TRT PSN  LFRRNALF PSKEARTLHVV +KKSSFR GR DSKNRRSST+ KEQ++++EEE+NR A       I E
Subjt:  MALTITNGGATCGTGGGILYRTSTRT-PSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMA------EIAE

Query:  NAGVAFDVDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAP
        NAGV FDVDENLPELPGLQPDFWEG QWD LGFFLEYLWAFGI FA+IACGIAVTTYNEGATDFK+TPAYKESVQT+EIL EPEASNPDVFESNPTEVAP
Subjt:  NAGVAFDVDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAP

Query:  SLE
        SLE
Subjt:  SLE

A0A5A7UV79 Putative AT-rich interactive domain-containing protein 5A6.7e-8182.27Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRT-PSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMA------EIAE
        M LTITNGGAT GT GGILYRT TRT PSN  LFRRNALF PSKEARTLHVV +KKSSFR GR DSKNRRSST+ KEQ++++EEE+NR A       I E
Subjt:  MALTITNGGATCGTGGGILYRTSTRT-PSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMA------EIAE

Query:  NAGVAFDVDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAP
        NAGV FDVDENLPELPGLQPDFWEG QWD LGFFLEYLWAFGI FA+IACGIAVTTYNEGATDFK+TPAYKESVQT+EIL EPEASNPDVFESNPTEVAP
Subjt:  NAGVAFDVDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAP

Query:  SLE
        SLE
Subjt:  SLE

A0A6J1BYA9 uncharacterized protein LOC1110068438.2e-8786.14Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEI------AEN
        MALTITNGGA  G+GGGILYRTST+ PSNQ L RRNALF PS EARTLHVV +KKSSFR GR DSKNRRSST+TKEQEE +EEE+NRMAEI       EN
Subjt:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEI------AEN

Query:  AGVAFDVDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPS
        AGVAFDVDENLPELPGLQPDFWEG +WDPLGFFLEYLWAFGIAFA+IACGIAVTTYNEGATDFKDTPAYKESVQTQE+LEEPEASNPDVFESNPTEVAPS
Subjt:  AGVAFDVDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPS

Query:  LE
        LE
Subjt:  LE

A0A6J1E7K1 uncharacterized protein LOC1114301293.1e-102100Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD
        MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD
Subjt:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD

Query:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
        VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
Subjt:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE

A0A6J1JIX0 uncharacterized protein LOC1114848597.6e-10198.47Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD
        MALTITNGGATCGTGGGILYRTSTRTPSNQ LFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQ+EEE+NRMAEIAENAGVAFD
Subjt:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD

Query:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
        VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE
Subjt:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73885.1 unknown protein1.9e-2740.31Show/hide
Query:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD
        MALT+++G      GGG   R +  T S++  F    L +    +RT       +        D +N  S     +++  +     R     ++A     
Subjt:  MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFD

Query:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASN-PDVFESNPTEVAPSL
            + +LPGL+PD +EG++WD LGFF++YLWAFGI FA+I+ G+A  TYNEGATDFK+TP YKE++Q++++L+E E+SN  DVFESNPTEVAP++
Subjt:  VDENLPELPGLQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASN-PDVFESNPTEVAPSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTGACCATAACCAATGGCGGCGCCACTTGTGGCACCGGCGGGGGAATTCTCTATAGAACCTCCACCAGAACTCCTTCTAACCAAGTCCTTTTCCGTCGCAACGC
GCTCTTTTCGCCGTCTAAAGAAGCCCGCACCCTCCATGTCGTTCATTCAAAGAAATCCTCCTTCCGAATTGGCCGAATCGACAGTAAGAACCGGAGGAGCTCGACGTCAA
CTAAGGAACAGGAAGAACAACAAGAAGAAGAACAAAATCGGATGGCCGAAATTGCTGAAAATGCCGGTGTAGCGTTTGATGTGGATGAGAATTTGCCGGAATTGCCTGGG
CTCCAGCCTGATTTCTGGGAGGGTCAGCAGTGGGATCCCCTCGGCTTCTTCCTCGAGTACTTGTGGGCCTTTGGCATCGCTTTCGCGGTAATTGCATGTGGTATTGCTGT
CACTACATACAACGAAGGAGCCACTGATTTCAAGGACACGCCTGCATACAAAGAATCAGTTCAAACTCAAGAGATATTAGAAGAACCAGAGGCATCAAACCCAGATGTCT
TTGAATCTAATCCAACAGAGGTGGCTCCTAGTTTGGAATGA
mRNA sequenceShow/hide mRNA sequence
GAAATTTCCCCTCTATCTTCTTATCCGCACAATCCTCCTCCATTTTTCTGGGTGTTCAGAGCTCACTCTCCTCCACTCAAATGGCTCTGACCATAACCAATGGCGGCGCC
ACTTGTGGCACCGGCGGGGGAATTCTCTATAGAACCTCCACCAGAACTCCTTCTAACCAAGTCCTTTTCCGTCGCAACGCGCTCTTTTCGCCGTCTAAAGAAGCCCGCAC
CCTCCATGTCGTTCATTCAAAGAAATCCTCCTTCCGAATTGGCCGAATCGACAGTAAGAACCGGAGGAGCTCGACGTCAACTAAGGAACAGGAAGAACAACAAGAAGAAG
AACAAAATCGGATGGCCGAAATTGCTGAAAATGCCGGTGTAGCGTTTGATGTGGATGAGAATTTGCCGGAATTGCCTGGGCTCCAGCCTGATTTCTGGGAGGGTCAGCAG
TGGGATCCCCTCGGCTTCTTCCTCGAGTACTTGTGGGCCTTTGGCATCGCTTTCGCGGTAATTGCATGTGGTATTGCTGTCACTACATACAACGAAGGAGCCACTGATTT
CAAGGACACGCCTGCATACAAAGAATCAGTTCAAACTCAAGAGATATTAGAAGAACCAGAGGCATCAAACCCAGATGTCTTTGAATCTAATCCAACAGAGGTGGCTCCTA
GTTTGGAATGATCTTGATATTTCGATATCAAAAACAGTCCCCACATCTTGAATCCATTATCATCCTCGTAAGCAGTTAAAGAAGTGAAAAGGAAACAAAGAATACTGTGT
GAATTTGTAATGCCATAAGCTTTCTAGGTATGTTATGAAAACCTTATTCTATTGAATCTAGTAAAGATTTTGATTTTGCATGTCTTAGTTTTCTTGTCACCATATTGTTC
TTCTTTTAGGCCATTCTCATTTACTTCATTCTGTCTATCTGCTATGGCCTTTTACTTAGATTTCTCTCCTCCTTGGGCTGACTGTTTTAGGGAGACAAAGGAACAAGACA
TATCTGAAAACAGGGTATTGGTCTGCAAATGTTAGAATGCTAAAGAAACAACGTTATTGAACCAAAACAACCTACTGGAAATCTAATAAAGAAGAG
Protein sequenceShow/hide protein sequence
MALTITNGGATCGTGGGILYRTSTRTPSNQVLFRRNALFSPSKEARTLHVVHSKKSSFRIGRIDSKNRRSSTSTKEQEEQQEEEQNRMAEIAENAGVAFDVDENLPELPG
LQPDFWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILEEPEASNPDVFESNPTEVAPSLE