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CmoCh10G002610 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G002610
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncarbon catabolite repressor protein 4 homolog 3
Genome locationCmo_Chr10:1165774..1167276
RNA-Seq ExpressionCmoCh10G002610
SyntenyCmoCh10G002610
Gene Ontology termsGO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589557.1 Carbon catabolite repressor protein 4-like 3, partial [Cucurbita argyrosperma subsp. sororia]3.1e-7094.41Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
        MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSL KSTSCSYTRRWY PSIR QLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG

Query:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS
        LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ V  FF +S
Subjt:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS

KAG7023243.1 Carbon catabolite repressor protein 4-like 3 [Cucurbita argyrosperma subsp. argyrosperma]4.4e-6995.59Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
        MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSL KSTSCSYTRRWY PSIR QLNEGVEIVRHWIEAD+PSASEEKFS+VSYNILAERNAWKHRG
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG

Query:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQVS
        LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ S
Subjt:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQVS

XP_022922060.1 carbon catabolite repressor protein 4 homolog 3 [Cucurbita moschata]3.3e-7296.5Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
        MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG

Query:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS
        LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ V  FF +S
Subjt:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS

XP_022987309.1 carbon catabolite repressor protein 4 homolog 3 [Cucurbita maxima]8.3e-6890.91Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
        MATTFLS CPF+RHHSHFRKSSSFCCSNDAEASSTSSL KST CSYTRRWY PSIR +LNEGVEIVRHWIEADQPS SEEKFSVVSYNILAERNAWKHRG
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG

Query:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS
        LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ V  FF +S
Subjt:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS

XP_023515538.1 carbon catabolite repressor protein 4 homolog 3 [Cucurbita pepo subsp. pepo]1.3e-6590.21Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
        MATTFLS CPFLRHHS FRKSSSFCCSNDAEASSTSSL KSTSCSYTRRWY PS+  QLN GVEIVRHWIEADQPSASEEKFSVVSYNILAER AWKHRG
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG

Query:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS
        LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ V  FF +S
Subjt:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS

TrEMBL top hitse value%identityAlignment
A0A0A0LUV0 Endo/exonuclease/phosphatase domain-containing protein1.9e-5480.82Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSND-AEASSTSSLTKSTSCS-YTRRWYKPSIRTQLN-EGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWK
        MATTFLS  PFLRHHSHF K   FCCSND A+ASSTSSL KST+ S YTRRWY PS R QLN EGV+I+RHWIE DQPSASEEKFSVVSYNILAERN WK
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSND-AEASSTSSLTKSTSCS-YTRRWYKPSIRTQLN-EGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWK

Query:  HRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS
        HRGLY NVP PYLKWNHRKRVICEELLMWNPDIICLQ V  +F +S
Subjt:  HRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS

A0A1S4DZP0 carbon catabolite repressor protein 4 homolog 3 isoform X18.2e-5377.78Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLN-EGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHR
        MATTFLS  PFLR HSHF K       + A+ASSTSSL KST+ SYTRRWY PS R QLN EGV+I+RHWIEADQPSASEEKFSVVSYNILAERN WKHR
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLN-EGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHR

Query:  GLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS
        GLY NVP PYLKWNHRKRVICEELLMWNPDIICLQ V  +F +S
Subjt:  GLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS

A0A6J1C033 carbon catabolite repressor protein 4 homolog 3-like isoform X29.6e-5477.08Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
        MATTFLS    LRH+S+F KS  FCCSNDA+ SSTSSL KST+ SY+RRWY  S RTQ+NEGVEIVRHWIE DQPSASEEK SVVSYNILAERNAWKHRG
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG

Query:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQV-SLFFSLSL
        LY+NVP  YLKWN+RKRVICEELLMWNPDIICLQ+   +F +S+
Subjt:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQV-SLFFSLSL

A0A6J1E7J3 carbon catabolite repressor protein 4 homolog 31.6e-7296.5Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
        MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG

Query:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS
        LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ V  FF +S
Subjt:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS

A0A6J1JIH9 carbon catabolite repressor protein 4 homolog 34.0e-6890.91Show/hide
Query:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG
        MATTFLS CPF+RHHSHFRKSSSFCCSNDAEASSTSSL KST CSYTRRWY PSIR +LNEGVEIVRHWIEADQPS SEEKFSVVSYNILAERNAWKHRG
Subjt:  MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRG

Query:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS
        LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ V  FF +S
Subjt:  LYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLS

SwissProt top hitse value%identityAlignment
O74874 CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr41.2e-0542.42Show/hide
Query:  EADQPSASEE--KFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ
        ++++PS + +  KF+++SYN+L ER A     LY   P   L W++RK +I +EL  +N DIICLQ
Subjt:  EADQPSASEE--KFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ

Q0WKY2 Carbon catabolite repressor protein 4 homolog 53.1e-0938.75Show/hide
Query:  RTQLNEGVEIVRHWI-EADQPSASEEKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ
        RT+      + R W+  A+      +K  +VSYN+L   NA  H  LY NVP  +L+W+ RK +IC+E+  +N  I+CLQ
Subjt:  RTQLNEGVEIVRHWI-EADQPSASEEKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ

Q24239 Protein angel3.8e-0742.03Show/hide
Query:  FSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQVSLFFSLSLSPLHLRV
        F VVSYNILA+    +H  LY  +P  +L W  R++ +  ELL  +PDI+CLQ   F  L +    LR+
Subjt:  FSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQVSLFFSLSLSPLHLRV

Q5B778 CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr44.7e-0540.58Show/hide
Query:  RHWIEADQPSA-SEEKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ
        R W+  D+ +A S +K SV+SYN L + +A +    Y   P   L W  R+  I  EL   +PDIICLQ
Subjt:  RHWIEADQPSA-SEEKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ

Q9LS39 Carbon catabolite repressor protein 4 homolog 31.1e-2246.88Show/hide
Query:  KSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGV---EIVRHWIEADQPSASE--EKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNH
        +SS  CCS+     S S+   S++ SY+RRW  P  R Q  + +   +I R WI++D    S+  E+F+VVSYNIL + N+  HR LY+NV +PYLKW +
Subjt:  KSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGV---EIVRHWIEADQPSASE--EKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNH

Query:  RKRVICEELLMWNPDIICLQ-VSLFFSL
        RKR+ICEEL+  NPDII +Q V  +F L
Subjt:  RKRVICEELLMWNPDIICLQ-VSLFFSL

Arabidopsis top hitse value%identityAlignment
AT1G73875.1 DNAse I-like superfamily protein2.2e-1038.75Show/hide
Query:  RTQLNEGVEIVRHWI-EADQPSASEEKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ
        RT+      + R W+  A+      +K  +VSYN+L   NA  H  LY NVP  +L+W+ RK +IC+E+  +N  I+CLQ
Subjt:  RTQLNEGVEIVRHWI-EADQPSASEEKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ

AT3G18500.1 DNAse I-like superfamily protein1.0e-2347.5Show/hide
Query:  KSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGV---EIVRHWIEADQPSASE--EKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNH
        +SS  CCS+     S S+   S++ SY+RRW  P  R Q  + +   +I R WI++D    S+  E+F+VVSYNIL + N+  HR LY+NV +PYLKW +
Subjt:  KSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGV---EIVRHWIEADQPSASE--EKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNH

Query:  RKRVICEELLMWNPDIICLQ
        RKR+ICEEL+  NPDII +Q
Subjt:  RKRVICEELLMWNPDIICLQ

AT3G18500.2 DNAse I-like superfamily protein7.9e-2446.88Show/hide
Query:  KSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGV---EIVRHWIEADQPSASE--EKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNH
        +SS  CCS+     S S+   S++ SY+RRW  P  R Q  + +   +I R WI++D    S+  E+F+VVSYNIL + N+  HR LY+NV +PYLKW +
Subjt:  KSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGV---EIVRHWIEADQPSASE--EKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNH

Query:  RKRVICEELLMWNPDIICLQ-VSLFFSL
        RKR+ICEEL+  NPDII +Q V  +F L
Subjt:  RKRVICEELLMWNPDIICLQ-VSLFFSL

AT3G18500.3 DNAse I-like superfamily protein7.9e-2446.88Show/hide
Query:  KSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGV---EIVRHWIEADQPSASE--EKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNH
        +SS  CCS+     S S+   S++ SY+RRW  P  R Q  + +   +I R WI++D    S+  E+F+VVSYNIL + N+  HR LY+NV +PYLKW +
Subjt:  KSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGV---EIVRHWIEADQPSASE--EKFSVVSYNILAERNAWKHRGLYTNVPLPYLKWNH

Query:  RKRVICEELLMWNPDIICLQ-VSLFFSL
        RKR+ICEEL+  NPDII +Q V  +F L
Subjt:  RKRVICEELLMWNPDIICLQ-VSLFFSL

AT5G11350.1 DNAse I-like superfamily protein9.3e-0943.82Show/hide
Query:  RHWIEA-DQPSASEEKFSVVSYNILAERNAWKH-RGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLSLSPLHLRVSA
        R W  A   PS   EKF V+SYNILA+  A  H R LY ++P   L W  RK  +  EL +W+ DI+CLQ V  F  L     H   SA
Subjt:  RHWIEA-DQPSASEEKFSVVSYNILAERNAWKH-RGLYTNVPLPYLKWNHRKRVICEELLMWNPDIICLQ-VSLFFSLSLSPLHLRVSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTACCTTCCTCAGCTCCTGCCCGTTCTTGCGCCACCACTCTCATTTTCGCAAGTCCTCCTCCTTTTGCTGCTCCAACGATGCCGAGGCTTCATCGACGTCGTC
ACTAACGAAATCAACTAGTTGCTCTTACACCCGTCGATGGTACAAACCCTCCATCCGAACGCAATTGAACGAAGGTGTTGAAATTGTGCGCCATTGGATTGAGGCGGATC
AACCTTCCGCTTCTGAAGAAAAATTTAGTGTAGTGTCATACAACATATTGGCGGAAAGAAATGCATGGAAACACAGAGGTTTATACACCAACGTTCCTTTACCGTATTTG
AAATGGAACCACCGTAAGAGAGTTATATGCGAGGAACTTCTTATGTGGAACCCCGATATAATATGCTTGCAGGTGAGCTTGTTCTTCTCTCTGTCTCTCTCTCCTCTCCA
TCTCCGTGTCTCTGCACGCTCCTACAGATTACCGTAA
mRNA sequenceShow/hide mRNA sequence
TGGCTGTTGCTGTGGCGCGCTTCCATGGCCACTACCTTCCTCAGCTCCTGCCCGTTCTTGCGCCACCACTCTCATTTTCGCAAGTCCTCCTCCTTTTGCTGCTCCAACGA
TGCCGAGGCTTCATCGACGTCGTCACTAACGAAATCAACTAGTTGCTCTTACACCCGTCGATGGTACAAACCCTCCATCCGAACGCAATTGAACGAAGGTGTTGAAATTG
TGCGCCATTGGATTGAGGCGGATCAACCTTCCGCTTCTGAAGAAAAATTTAGTGTAGTGTCATACAACATATTGGCGGAAAGAAATGCATGGAAACACAGAGGTTTATAC
ACCAACGTTCCTTTACCGTATTTGAAATGGAACCACCGTAAGAGAGTTATATGCGAGGAACTTCTTATGTGGAACCCCGATATAATATGCTTGCAGGTGAGCTTGTTCTT
CTCTCTGTCTCTCTCTCCTCTCCATCTCCGTGTCTCTGCACGCTCCTACAGATTACCGTAA
Protein sequenceShow/hide protein sequence
MATTFLSSCPFLRHHSHFRKSSSFCCSNDAEASSTSSLTKSTSCSYTRRWYKPSIRTQLNEGVEIVRHWIEADQPSASEEKFSVVSYNILAERNAWKHRGLYTNVPLPYL
KWNHRKRVICEELLMWNPDIICLQVSLFFSLSLSPLHLRVSARSYRLP