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CmoCh10G002660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G002660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S28
Genome locationCmo_Chr10:1176053..1177932
RNA-Seq ExpressionCmoCh10G002660
SyntenyCmoCh10G002660
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold
IPR028626 - Ribosomal protein S28e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR43205.1 hypothetical protein CICLE_v10013157mg [Citrus clementina]1.9e-2666.98Show/hide
Query:  GSSVFSLTRVNLSEPVYELKTLLCYAGIFLDVLVENIEVIRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
        G  ++ ++ +    P+ EL  L   +  F  +L      +RM+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESER
Subjt:  GSSVFSLTRVNLSEPVYELKTLLCYAGIFLDVLVENIEVIRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER

Query:  EARRLR
        EARRLR
Subjt:  EARRLR

KAG5555466.1 hypothetical protein RHGRI_006200 [Rhododendron griersonianum]8.4e-2789.19Show/hide
Query:  LVENIEVIRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        L+E   V+RMES IKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  LVENIEVIRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KGN63808.2 hypothetical protein Csa_014218 [Cucumis sativus]1.4e-2698.51Show/hide
Query:  IRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        +RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  IRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

RDX85133.1 40S ribosomal protein S28, partial [Mucuna pruriens]8.4e-2790.28Show/hide
Query:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRCIFGVI
        RMESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRL+  FG+I
Subjt:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRCIFGVI

XP_022134697.1 40S ribosomal protein S28-1-like [Momordica charantia]1.9e-26100Show/hide
Query:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

TrEMBL top hitse value%identityAlignment
A0A0S3SUH5 Uncharacterized protein (Fragment)2.6e-2695.52Show/hide
Query:  IRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IRMESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  IRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A371G486 40S ribosomal protein S28 (Fragment)4.0e-2790.28Show/hide
Query:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRCIFGVI
        RMESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRL+  FG+I
Subjt:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRCIFGVI

A0A6J1C0B5 40S ribosomal protein S28-1-like9.0e-27100Show/hide
Query:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  RMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

V4SW27 Uncharacterized protein9.0e-2766.98Show/hide
Query:  GSSVFSLTRVNLSEPVYELKTLLCYAGIFLDVLVENIEVIRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
        G  ++ ++ +    P+ EL  L   +  F  +L      +RM+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESER
Subjt:  GSSVFSLTRVNLSEPVYELKTLLCYAGIFLDVLVENIEVIRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER

Query:  EARRLR
        EARRLR
Subjt:  EARRLR

W9RZ99 Nicotinamide mononucleotide adenylyltransferase 12.0e-2695.52Show/hide
Query:  IRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        +RMESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  IRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-26.9e-2489.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

P46302 40S ribosomal protein S288.1e-2590.77Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q6PBK3 40S ribosomal protein S281.3e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q90YP3 40S ribosomal protein S281.3e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q9SR73 40S ribosomal protein S28-11.8e-2492.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.3e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.3e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G64140.1 ribosomal protein S284.9e-2589.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCATCAGTGTTTTCATTAACTAGAGTGAATCTTTCGGAGCCTGTTTACGAGTTGAAAACCTTGCTATGCTATGCAGGCATATTCCTCGATGTCTTGGTTGAAAA
TATTGAAGTAATTAGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCG
ATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTAACCCTGCTGGAGTCTGAGAGGGAAGCTAGAAGACTGCGTTGTATTTTT
GGTGTAATTCAAGTCATGCATACAATGAAATTCTTGAGTTCAGTTGACCATGATATGCCATATAATTCATCCCAACACTGTATGAGGATGGATCTTAAATATAAAGTGGT
TCTTCCTAAAACATTTGCAGCAGCCACAATGGGGGAAGAAAATCCCCCATCCAGTGATGGAGTGTACAAACCAATGAGGGCTGCCTCTGAATATCTGAAGAAACCCCTTT
TTGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTCATCAGTGTTTTCATTAACTAGAGTGAATCTTTCGGAGCCTGTTTACGAGTTGAAAACCTTGCTATGCTATGCAGGCATATTCCTCGATGTCTTGGTTGAAAA
TATTGAAGTAATTAGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCG
ATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTAACCCTGCTGGAGTCTGAGAGGGAAGCTAGAAGACTGCGTTGTATTTTT
GGTGTAATTCAAGTCATGCATACAATGAAATTCTTGAGTTCAGTTGACCATGATATGCCATATAATTCATCCCAACACTGTATGAGGATGGATCTTAAATATAAAGTGGT
TCTTCCTAAAACATTTGCAGCAGCCACAATGGGGGAAGAAAATCCCCCATCCAGTGATGGAGTGTACAAACCAATGAGGGCTGCCTCTGAATATCTGAAGAAACCCCTTT
TTGACTGA
Protein sequenceShow/hide protein sequence
MGSSVFSLTRVNLSEPVYELKTLLCYAGIFLDVLVENIEVIRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRCIF
GVIQVMHTMKFLSSVDHDMPYNSSQHCMRMDLKYKVVLPKTFAAATMGEENPPSSDGVYKPMRAASEYLKKPLFD