CuGenDBv2

Gene ID	CmoCh10G003010
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Nucleic acid binding,ATP-dependent helicase
Genome location	Cmo_Chr10:1345843..1347185
RNA-Seq Expression	CmoCh10G003010
Synteny	CmoCh10G003010
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004386 - helicase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_038878306.1 uncharacterized ATP-dependent helicase YprA isoform X2 [Benincasa hispida]

5.8e-33

76.47

Show/hide

Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV
        MEES RE  IKTLTGES TVS SG RTI+D    LRRNFPS+TISPNF+LFFKGTKLKPQSQ +  RIDHGE+LVLIPF KK+SSKS+ RDQYEQGSSV 
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV

Query:  LG
         G
Subjt:  LG

XP_038878310.1 uncharacterized ATP-dependent helicase YprA isoform X4 [Benincasa hispida]

5.8e-33

76.47

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Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV
        MEES RE  IKTLTGES TVS SG RTI+D    LRRNFPS+TISPNF+LFFKGTKLKPQSQ +  RIDHGE+LVLIPF KK+SSKS+ RDQYEQGSSV 
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV

Query:  LG
         G
Subjt:  LG

XP_038878311.1 uncharacterized ATP-dependent helicase YprA isoform X5 [Benincasa hispida]

5.8e-33

76.47

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Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV
        MEES RE  IKTLTGES TVS SG RTI+D    LRRNFPS+TISPNF+LFFKGTKLKPQSQ +  RIDHGE+LVLIPF KK+SSKS+ RDQYEQGSSV 
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV

Query:  LG
         G
Subjt:  LG

XP_038878313.1 uncharacterized ATP-dependent helicase YprA isoform X7 [Benincasa hispida]

5.8e-33

76.47

Show/hide

Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV
        MEES RE  IKTLTGES TVS SG RTI+D    LRRNFPS+TISPNF+LFFKGTKLKPQSQ +  RIDHGE+LVLIPF KK+SSKS+ RDQYEQGSSV 
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV

Query:  LG
         G
Subjt:  LG

XP_038878315.1 uncharacterized ATP-dependent helicase YprA isoform X8 [Benincasa hispida]

5.8e-33

76.47

Show/hide

Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV
        MEES RE  IKTLTGES TVS SG RTI+D    LRRNFPS+TISPNF+LFFKGTKLKPQSQ +  RIDHGE+LVLIPF KK+SSKS+ RDQYEQGSSV 
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV

Query:  LG
         G
Subjt:  LG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7US68 Putative ATP-dependent helicase YprA isoform X1

8.5e-30

72.55

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Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV
        MEESERE  IKTLTGES TVS SG  TI+D    LRRNFPS+TISPNF+LFFKGTKLKPQSQ +   IDHGE+LVLIPF KK+SSKS+ RDQYE   SV 
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV

Query:  LG
         G
Subjt:  LG

A0A5D3BGJ3 Putative ATP-dependent helicase YprA isoform X1

8.5e-30

72.55

Show/hide

Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV
        MEESERE  IKTLTGES TVS SG  TI+D    LRRNFPS+TISPNF+LFFKGTKLKPQSQ +   IDHGE+LVLIPF KK+SSKS+ RDQYE   SV 
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVV

Query:  LG
         G
Subjt:  LG

A0A6J1KZ38 uncharacterized protein LOC111500077 isoform X3

2.2e-30

72.73

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Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSV
        MEESE E  IKTLTGES T+S SG RTIED    LR+NFPS+T+SPNF+LF KGTKLKPQS+ +  RID GE+LVLIPF KK+SSK Q RDQYEQGSSV
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSV

A0A6J1L0Y0 uncharacterized protein LOC111500077 isoform X2

2.2e-30

72.73

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Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSV
        MEESE E  IKTLTGES T+S SG RTIED    LR+NFPS+T+SPNF+LF KGTKLKPQS+ +  RID GE+LVLIPF KK+SSK Q RDQYEQGSSV
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSV

A0A6J1L3C6 uncharacterized protein LOC111500077 isoform X1

2.2e-30

72.73

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Query:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSV
        MEESE E  IKTLTGES T+S SG RTIED    LR+NFPS+T+SPNF+LF KGTKLKPQS+ +  RID GE+LVLIPF KK+SSK Q RDQYEQGSSV
Subjt:  MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G08110.1 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases

2.8e-09

37.35

Show/hide

Query:  SIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRD
        S++++ GES+TV  S   TI D    L+  FP ++ S NF+L+ KG KLK  ++     I+ G+ L L PF KK+  ++ + D
Subjt:  SIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRD

Sequences

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CDS sequence

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mRNA sequence

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ATGGAGGAGAGTGAGAGGGAAACCAGTATCAAAACCCTAACCGGAGAGTCCTCGACGGTTTCTTTTTCCGGCGGCAGAACAATTGAGGACTTCAGCTTTCGACTCAGGCG
GAATTTCCCCTCCTCAACCATTTCCCCCAATTTTTACCTCTTTTTCAAGGGAACTAAATTGAAACCGCAGAGTCAAACTAATGAGCGTCGCATTGACCATGGCGAATATC
TAGTTCTGATTCCATTTATTAAAAAGGATTCTTCCAAATCCCAGCAACGCGATCAATATGAACAAGGGTCCAGTGTTGTGCTTGGTCCGACATGGTGCAGGATTTATCGT
ATTTACACGACTGTTCTGTTGGAGGGAGAGAGGAAAATGAGGCTTATCGTGAGAGAGAGAGGGGGTTCGTGGATGCTGAACTGGCGATTCACAGGTACATCGGCAATTGG
AGTATCAAAGGCATCAAGAGGACCCAAACTTGATTCAGTGGAAGCACAGGAGCATATCTTGCAGATCATGAGGGGAGTAAAAACAAGAAAATCTACAGCTTGCTGATGGG
AGAAGAAGAAGCTATCACCATCCCTTTTTCTTTCTCTTCTCAAGAAACTGGGGTGGAGTAAATAAAATCTCCTACCATACTCAAAATTGTCTACTTTTTGAATCTACAAT
GAAAAGCATTGGTGGAAGATGTTGGTACTACAGTTTTAACTTGTTATGCAATCTTCAAAATAAGTGTGGCTTTGATTCAAGTAACGTTTCCAGAGAGGCCTGTACCTGGT
TATGGCCAGCTTCAACCAAGGCTTCATGTTCCCATTGAAGTGAATCACAGCTGCACTCTCGATCAAACGGTTGTCGATGTTTAGGTCGTAACCCAATCCTAAGACATGCC
ATCTCCGGTCGAGTGGTTCCGTTAGCCCATAGAAGGTTAATAAACCAGGAGGAAGAGTCCCTGGCTTCCAAAGCAAACCGTCTGCATTTTGTTCCTGCCAATAATGATAC
CGA

Protein sequence

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MEESERETSIKTLTGESSTVSFSGGRTIEDFSFRLRRNFPSSTISPNFYLFFKGTKLKPQSQTNERRIDHGEYLVLIPFIKKDSSKSQQRDQYEQGSSVVLGPTWCRIYR
IYTTVLLEGERKMRLIVRERGGSWMLNWRFTGTSAIGVSKASRGPKLDSVEAQEHILQIMRGVKTRKSTAC

CmoCh10G003010 (gene) of Cucurbita moschata (Rifu) v1 genome