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CmoCh10G003900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G003900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCytochrome b559 subunit beta
Genome locationCmo_Chr10:1768827..1769823
RNA-Seq ExpressionCmoCh10G003900
SyntenyCmoCh10G003900
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0015074 - DNA integration (biological process)
GO:0009539 - photosystem II reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR006216 - Photosystem II cytochrome b559, conserved site
IPR006241 - Photosystem II cytochrome b559, beta subunit
IPR013081 - Photosystem II cytochrome b559, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF1831159.1 unnamed protein product [Brassica napus]7.7e-0771.43Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFMN----MRKCTV
        MTID+TYPIFTVRWLAVHGL VPTVSFLG ++    +++CTV
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFMN----MRKCTV
KAF4348565.1 hypothetical protein F8388_000244 [Cannabis sativa]7.7e-0790.62Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFMN
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG  N
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFMN
KAF4396250.1 hypothetical protein F8388_019796 [Cannabis sativa]7.7e-0790.62Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFMN
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG  N
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFMN
THU42103.1 hypothetical protein C4D60_Mb00t12470 [Musa balbisiana]7.7e-0793.55Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFM
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG M
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFM
YP_004072478.1 PSII reaction center subunit VI [Corynocarpus laevigatus]7.7e-07100Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
TrEMBL top hitse value%identityAlignment
A0A1P8LE87 Cytochrome b559 subunit beta3.8e-07100Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
A0A410HFA8 Cytochrome b559 subunit beta3.8e-07100Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
A0A4S8I550 Cytochrome b559 subunit beta3.8e-0793.55Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFM
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG M
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFM
A0A6H0EQL2 Cytochrome b559 subunit beta3.8e-07100Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
A0A6M3RTT6 Cytochrome b559 subunit beta3.8e-07100Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
SwissProt top hitse value%identityAlignment
P62095 Cytochrome b559 subunit beta2.3e-0996.55Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Q67HN7 Cytochrome b559 subunit beta2.3e-0996.55Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Q6EYV9 Cytochrome b559 subunit beta2.3e-0996.55Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Q7J1C2 Cytochrome b559 subunit beta2.3e-0996.55Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Q7J1C5 Cytochrome b559 subunit beta2.3e-0996.55Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
Arabidopsis top hitse value%identityAlignment
ATCG00570.1 photosystem II reaction center protein F1.6e-1096.55Show/hide
Query:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG
        MTID+TYPIFTVRWLAVHGLAVPTVSFLG
Subjt:  MTIDKTYPIFTVRWLAVHGLAVPTVSFLG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATCGATAAAACTTATCCTATTTTTACAGTGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTACCGTTTCTTTTTTAGGGTTCATGAACATGAGGAAATGCAC
AGTGGATTGTGTAATGGGCTACAGGCATAGTGAAGCCAATGTCTCAGCCCCTGGATTCATGGCCACAAGAGGATCTGGTTGTTTCCAAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTATCGATAAAACTTATCCTATTTTTACAGTGCGATGGTTGGCTGTTCACGGACTAGCTGTACCTACCGTTTCTTTTTTAGGGTTCATGAACATGAGGAAATGCAC
AGTGGATTGTGTAATGGGCTACAGGCATAGTGAAGCCAATGTCTCAGCCCCTGGATTCATGGCCACAAGAGGATCTGGTTGTTTCCAAATTTGA
Protein sequenceShow/hide protein sequence
MTIDKTYPIFTVRWLAVHGLAVPTVSFLGFMNMRKCTVDCVMGYRHSEANVSAPGFMATRGSGCFQI