CuGenDBv2

Gene ID	CmoCh10G004010
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosome biogenesis protein
Genome location	Cmo_Chr10:1815510..1818047
RNA-Seq Expression	CmoCh10G004010
Synteny	CmoCh10G004010
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6589685.1 hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sororia]

4.5e-72

92.81

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK           KLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLKETKQMGTVLNHPAFQADPLGAIHLHL+STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

KAG7023365.1 hypothetical protein SDJN02_14390 [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-77

97.01

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEY+LQKKLRRRKR LKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
         LKETKQMGTVLNHPAFQADPLGAIHLHL+STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

XP_022922102.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata]

5.3e-73

94.01

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

XP_022987345.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima]

3.5e-72

92.81

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKRDLKAFDLTALSEFLPGLK PKQKTSDTELKVNCKSRLKF
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLKETKQMGTVLNHPAFQADPLGAIHLHL+STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]

5.9e-72

92.81

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLKETKQMGTVLNHPAFQADPLGAIHLHL+STQPVEE KKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

1.8e-58

77.25

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKP SRSD KSKAERKFEKK+QFYERVGETI TLNAQK+ITK         +K  RRRKRDLKAFDL+ LSEFLPGL+A KQK S  ELK+NCKSRLKF
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        +LKE KQMGTVLNHP FQADPL A+ LHL+ TQP+EE KKKK N+NGSKKRKEKKSKA+AKPSSMEM
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

A0A6J1CYW4 putative ribosome biogenesis protein slx9-like isoform X1

2.0e-57

76.36

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKP SRSDSKSKAERKF+KK+QFYERVGET+  LNAQKTI+K ++        K R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLKF
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM
        +LKE KQMGTVLNHPAFQADPL AIHLHL+STQPVEE KKK TN+NGSKKRKEKK KA+A P  M
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM

A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X2

2.0e-57

76.97

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKP SRSDSKSKAERKF+KK+QFYERVGET+  LNAQKTI+K S         K R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLKF
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM
        +LKE KQMGTVLNHPAFQADPL AIHLHL+STQPVEE KKK TN+NGSKKRKEKK KA+A P  M
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

2.6e-73

94.01

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like

1.7e-72

92.81

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKRDLKAFDLTALSEFLPGLK PKQKTSDTELKVNCKSRLKF
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKF

Query:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        VLKETKQMGTVLNHPAFQADPLGAIHLHL+STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  VLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

5.7e-33

52.83

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLK
        MGKP+  S+  +K+++KFEKK+QFY +V +T+ +L+ QK I K         +KK+R R++ LKA+DLT LSEFLP   A  K      ELK+NCK R K
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLK

Query:  FVLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQ-PVEETKKKKTNRNGSKKRKEKKSK
         VL E +++  VL+HPAFQADP+G+I  HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  FVLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQ-PVEETKKKKTNRNGSKKRKEKKSK

AT2G01640.2 unknown protein

5.7e-33

52.83

Show/hide

Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLK
        MGKP+  S+  +K+++KFEKK+QFY +V +T+ +L+ QK I K         +KK+R R++ LKA+DLT LSEFLP   A  K      ELK+NCK R K
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLK

Query:  FVLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQ-PVEETKKKKTNRNGSKKRKEKKSK
         VL E +++  VL+HPAFQADP+G+I  HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  FVLKETKQMGTVLNHPAFQADPLGAIHLHLQSTQ-PVEETKKKKTNRNGSKKRKEKKSK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGCAAACCAACCTCTCGGTCGGATTCGAAATCTAAAGCCGAACGCAAATTTGAAAAGAAGATACAATTCTATGAGAGAGTTGGTGAAACTATTGCTACCTTAAATGC
TCAAAAGACTATTACTAAGTATTCTGCTGAAATTGAGTACGTTTTACAGAAGAAGCTTCGAAGACGTAAAAGGGATTTGAAGGCTTTCGATCTTACTGCTCTATCAGAAT
TTCTTCCTGGATTGAAGGCTCCCAAACAAAAAACTTCTGACACCGAGTTAAAAGTAAATTGCAAGTCTAGGCTAAAGTTTGTATTGAAGGAAACAAAGCAAATGGGTACA
GTTCTTAATCACCCTGCATTCCAGGCAGATCCCTTGGGAGCTATTCATCTACATTTACAGAGCACACAACCAGTTGAGGAAACGAAGAAAAAGAAGACGAACAGAAATGG
GAGCAAGAAAAGGAAAGAGAAAAAGTCCAAAGCCACTGCAAAACCTTCATCTATGGAGATGTGA

mRNA sequence

Show/hide mRNA sequence

AAAAAAGAAAAAAACTGGAAAAACCGCGCAAACCCTACTTCATCTCTAGTGGCCGCCGATTTCCCGCTCGTGGTCGCCTGCTTGTGGTCGCCGATTACCACCGGGAGTAA
ACGCTCGTAACCAGCACACAAATTTTCGATTTGAAGCGTCGGTGAGCTGGAGGTCTCTATAATATAATTCCTTCTTTAGATTCAAGTTATCAGAAAGCTTGCAAGTTGTA
ATTATGGGCAAACCAACCTCTCGGTCGGATTCGAAATCTAAAGCCGAACGCAAATTTGAAAAGAAGATACAATTCTATGAGAGAGTTGGTGAAACTATTGCTACCTTAAA
TGCTCAAAAGACTATTACTAAGTATTCTGCTGAAATTGAGTACGTTTTACAGAAGAAGCTTCGAAGACGTAAAAGGGATTTGAAGGCTTTCGATCTTACTGCTCTATCAG
AATTTCTTCCTGGATTGAAGGCTCCCAAACAAAAAACTTCTGACACCGAGTTAAAAGTAAATTGCAAGTCTAGGCTAAAGTTTGTATTGAAGGAAACAAAGCAAATGGGT
ACAGTTCTTAATCACCCTGCATTCCAGGCAGATCCCTTGGGAGCTATTCATCTACATTTACAGAGCACACAACCAGTTGAGGAAACGAAGAAAAAGAAGACGAACAGAAA
TGGGAGCAAGAAAAGGAAAGAGAAAAAGTCCAAAGCCACTGCAAAACCTTCATCTATGGAGATGTGACTTATCTCTCATCGGCTTTCTTTTGCCATATTAAGCCTATAGC
TTTTTTTTCAGCCCGAGAAGTTTGTTCGGACGTAACTCTTCGACTAAGAGGTAAGAAGTTCAAATTGTCAGCTCGATCTTGCTTTCTTAATTTTGATTATAAGAACCCCT
AGAATTCATGGGTGGGTGAGAGTGGTTCTTTCAATTTTTCCTTCGACTAAGAGGTAAGAAAGTGGAAGTTGATAACTATGAATGAATGAACTCATATCAAGCAAAAATGA
GTTCAATACCATTTGGAATATTTATTTATCAAGTGCAAAATCTTGGATTGGTATTTTCCTGAAACCAAATAGGAACCATGCTTGTTCCTTGAAACATCTTTCACTCCATC
TCTCTTTGGTTATGAGATCTTGCCTCATTAGTTCCGAGCTCCGAGATCAACAGTTATCAAATCTTTCCTGTTCTCAATTAAATCAACTTTGTTCGTACATGATATTCGCT
TTTGTTTTGGGTGTGTTTATGCTTCTATTTGTATTGATCCGTAATAGCATAAGCTCATCACTAGTAAATATTGTTCGTTACATATCATTGTTCAATCTCACGGTTTTAAA
ACACATGTGCTATGGAGAAGTTTCCATATTCTTAGA

Protein sequence

Show/hide protein sequence

MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYVLQKKLRRRKRDLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGT
VLNHPAFQADPLGAIHLHLQSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

CmoCh10G004010 (gene) of Cucurbita moschata (Rifu) v1 genome