; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G004050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G004050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptiontRNA-specific adenosine deaminase 2
Genome locationCmo_Chr10:1827009..1829997
RNA-Seq ExpressionCmoCh10G004050
SyntenyCmoCh10G004050
Gene Ontology termsGO:0002100 - tRNA wobble adenosine to inosine editing (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0052717 - tRNA-specific adenosine-34 deaminase activity (molecular function)
InterPro domainsIPR002125 - Cytidine and deoxycytidylate deaminase domain
IPR016192 - APOBEC/CMP deaminase, zinc-binding
IPR016193 - Cytidine deaminase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589690.1 tRNA-specific adenosine deaminase TAD2, partial [Cucurbita argyrosperma subsp. sororia]2.0e-69100Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
        IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL

KAG7023369.1 tRNA-specific adenosine deaminase 2 [Cucurbita argyrosperma subsp. argyrosperma]3.1e-7884.13Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHLVVMGKEGDSNVLQELWHPKQLLFFELFTNRGIPMLQSLTGSLVTIRRVNERNEV
        IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL      G                      RGIPMLQSLTGSLVTIR+VNERNE+
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHLVVMGKEGDSNVLQELWHPKQLLFFELFTNRGIPMLQSLTGSLVTIRRVNERNEV

XP_022922025.1 tRNA-specific adenosine deaminase 2-like isoform X1 [Cucurbita moschata]2.0e-69100Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
        IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL

XP_022922026.1 tRNA-specific adenosine deaminase 2-like isoform X2 [Cucurbita moschata]2.0e-69100Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
        IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL

XP_023515826.1 tRNA-specific adenosine deaminase 2-like isoform X2 [Cucurbita pepo subsp. pepo]2.9e-6898.52Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDG+VIATGRNRTNETRNATRHAEMEAID LIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
        IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL

TrEMBL top hitse value%identityAlignment
A0A0A0LZX4 CMP/dCMP-type deaminase domain-containing protein1.0e-6695.56Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSSVEDCSSDTL FMELAI QAKLALN+LEVPVGCVIVEDGMVIATGRNRT ETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
        IMCASALSI+GIKEVYYGCANDKFGGCGS+LSLHL
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL

A0A5D3DXI1 tRNA-specific adenosine deaminase 2 isoform X41.1e-6594.81Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSSVEDCSS TL FMELAI QAKLAL+SLEVPVGCVIVEDGMVIATGRNRT ETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
        IMCASALSI+GIKEVYYGCANDKFGGCGS+LSLHL
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL

A0A6J1C158 tRNA-specific adenosine deaminase 25.0e-6694.81Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSS +DC SDTLGFMELAI QAKLALNSLEVPVGCVIVEDGMVIATGRNRT ETRNATRHAEMEAIDILIEAW+RDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
        IMCASALSILGIKEVYYGCANDKFGGCGS+LSLHL
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL

A0A6J1E301 tRNA-specific adenosine deaminase 2-like isoform X29.8e-70100Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
        IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL

A0A6J1E7F7 tRNA-specific adenosine deaminase 2-like isoform X19.8e-70100Show/hide
Query:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
        MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC
Subjt:  MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPC

Query:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
        IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL
Subjt:  IMCASALSILGIKEVYYGCANDKFGGCGSVLSLHL

SwissProt top hitse value%identityAlignment
Q0P4H0 tRNA-specific adenosine deaminase 24.4e-2752.1Show/hide
Query:  FMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKE
        +M  A   A+ ALN+ EVPVGC++V D  V+  GRN  NET+NATRHAEM AID +++  +++   + +V   F    LYVT EPCIMCA AL +L I  
Subjt:  FMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKE

Query:  VYYGCANDKFGGCGSVLSL
        V YGC N++FGGCGSVL++
Subjt:  VYYGCANDKFGGCGSVLSL

Q5E9J7 tRNA-specific adenosine deaminase 21.4e-2850.76Show/hide
Query:  DSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCI
        D +    + +T  +ME A+  AK AL++ EVPVGC++V +  V+  GRN  N+T+NATRHAEM AID  ++  +R G S SEV   F    LYVT EPCI
Subjt:  DSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCI

Query:  MCASALSILGIKEVYYGCANDKFGGCGSVLSL
        MCA+AL ++ I  V YGC N++FGGCGSVL +
Subjt:  MCASALSILGIKEVYYGCANDKFGGCGSVLSL

Q6IDB6 tRNA-specific adenosine deaminase TAD21.6e-5377.69Show/hide
Query:  EDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCAS
        ED   D+  +M  A+ QAKLAL +LEVPVGCV +EDG VIA+GRNRTNETRNATRHAEMEAID L+  WQ+DGLS S+VA+KFSKC LYVTCEPCIMCAS
Subjt:  EDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCAS

Query:  ALSILGIKEVYYGCANDKFGGCGSVLSLHL
        ALS LGIKEVYYGC NDKFGGCGS+LSLHL
Subjt:  ALSILGIKEVYYGCANDKFGGCGSVLSLHL

Q6P6J0 tRNA-specific adenosine deaminase 28.9e-2852.03Show/hide
Query:  DTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSIL
        +T  +ME A+  AK AL ++EVPVGC++V +  V+  GRN  N+T+NATRHAEM AID +++   + G S S V   F    LYVT EPCIMCA+AL ++
Subjt:  DTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSIL

Query:  GIKEVYYGCANDKFGGCGSVLSL
         I  V YGC N++FGGCGSVL++
Subjt:  GIKEVYYGCANDKFGGCGSVLSL

Q7Z6V5 tRNA-specific adenosine deaminase 22.3e-2852Show/hide
Query:  SSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALS
        + +T  +ME A+  AK AL + EVPVGC++V +  V+  GRN  N+T+NATRHAEM AID +++  ++ G S SEV   F    LYVT EPCIMCA+AL 
Subjt:  SSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALS

Query:  ILGIKEVYYGCANDKFGGCGSVLSL
        ++ I  V YGC N++FGGCGSVL++
Subjt:  ILGIKEVYYGCANDKFGGCGSVLSL

Arabidopsis top hitse value%identityAlignment
AT1G48175.1 Cytidine/deoxycytidylate deaminase family protein1.1e-5477.69Show/hide
Query:  EDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCAS
        ED   D+  +M  A+ QAKLAL +LEVPVGCV +EDG VIA+GRNRTNETRNATRHAEMEAID L+  WQ+DGLS S+VA+KFSKC LYVTCEPCIMCAS
Subjt:  EDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCAS

Query:  ALSILGIKEVYYGCANDKFGGCGSVLSLHL
        ALS LGIKEVYYGC NDKFGGCGS+LSLHL
Subjt:  ALSILGIKEVYYGCANDKFGGCGSVLSLHL

AT1G68720.1 tRNA arginine adenosine deaminase6.8e-1536Show/hide
Query:  FMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKE
        FM  A+++AK A ++ EVPVG V+V DG +IA G N   E R++T HAEM  I        R+G S +  + + +   LYVT EPC MCA A+    +  
Subjt:  FMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKE

Query:  VYYGCANDKFGGCGSVLSLHLVVMGKEGDSNVLQEL-------WHPKQLL
        + +G  N   G  GS + L     G EG+ +   E        +HPK  +
Subjt:  VYYGCANDKFGGCGSVLSLHLVVMGKEGDSNVLQEL-------WHPKQLL

AT5G28050.1 Cytidine/deoxycytidylate deaminase family protein1.2e-0636.05Show/hide
Query:  PVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYG
        P G VIV +  V+A+  N   +  + T HAE+ AI    EA ++  L+  E+    S+C++Y +CEPC MC  A+ +  +K + YG
Subjt:  PVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYG

AT5G28050.2 Cytidine/deoxycytidylate deaminase family protein1.2e-0636.05Show/hide
Query:  PVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYG
        P G VIV +  V+A+  N   +  + T HAE+ AI    EA ++  L+  E+    S+C++Y +CEPC MC  A+ +  +K + YG
Subjt:  PVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSILGIKEVYYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTTCAGTGGAGGATTGTTCTTCCGATACGCTTGGGTTTATGGAGCTTGCTATTCTTCAGGCCAAACTCGCACTAAACAGCCTTGAAGTGCCTGTGGGC
TGTGTGATTGTTGAAGATGGGATGGTCATTGCCACTGGAAGAAACCGCACTAACGAGACCCGAAATGCTACCAGACATGCAGAGATGGAAGCGATCGATATCCTG
ATTGAGGCATGGCAGAGGGATGGACTTTCAACCTCAGAAGTGGCTGATAAATTCTCGAAGTGCAAACTTTATGTTACCTGTGAACCATGCATTATGTGTGCTTCT
GCCCTATCAATACTCGGTATAAAGGAAGTATATTATGGTTGTGCAAATGATAAATTTGGTGGATGTGGATCTGTATTGTCGCTTCACTTAGTAGTAATGGGCAAG
GAAGGGGATTCAAATGTACTGCAGGAATTATGGCATCCGAAGCAGTTGCTCTTTTTCGAACTTTTTACGAACAGGGGAATCCCAATGCTCCAAAGCCTCACAGGC
TCCTTGGTAACCATCAGGCGGGTCAATGAGAGAAATGAGGTCACTTTTGCTTATGATTCTGTTCCTGTCAAAAGAGCTTTTGAAACTGGCAAAGGCATCCCCATG
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTTCAGTGGAGGATTGTTCTTCCGATACGCTTGGGTTTATGGAGCTTGCTATTCTTCAGGCCAAACTCGCACTAAACAGCCTTGAAGTGCCTGTGGGC
TGTGTGATTGTTGAAGATGGGATGGTCATTGCCACTGGAAGAAACCGCACTAACGAGACCCGAAATGCTACCAGACATGCAGAGATGGAAGCGATCGATATCCTG
ATTGAGGCATGGCAGAGGGATGGACTTTCAACCTCAGAAGTGGCTGATAAATTCTCGAAGTGCAAACTTTATGTTACCTGTGAACCATGCATTATGTGTGCTTCT
GCCCTATCAATACTCGGTATAAAGGAAGTATATTATGGTTGTGCAAATGATAAATTTGGTGGATGTGGATCTGTATTGTCGCTTCACTTAGTAGTAATGGGCAAG
GAAGGGGATTCAAATGTACTGCAGGAATTATGGCATCCGAAGCAGTTGCTCTTTTTCGAACTTTTTACGAACAGGGGAATCCCAATGCTCCAAAGCCTCACAGGC
TCCTTGGTAACCATCAGGCGGGTCAATGAGAGAAATGAGGTCACTTTTGCTTATGATTCTGTTCCTGTCAAAAGAGCTTTTGAAACTGGCAAAGGCATCCCCATG
TAG
Protein sequenceShow/hide protein sequence
MDSSVEDCSSDTLGFMELAILQAKLALNSLEVPVGCVIVEDGMVIATGRNRTNETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCAS
ALSILGIKEVYYGCANDKFGGCGSVLSLHLVVMGKEGDSNVLQELWHPKQLLFFELFTNRGIPMLQSLTGSLVTIRRVNERNEVTFAYDSVPVKRAFETGKGIPM