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CmoCh10G004680 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G004680
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionglycine-rich cell wall structural protein 2-like
Genome locationCmo_Chr10:2097976..2098419
RNA-Seq ExpressionCmoCh10G004680
SyntenyCmoCh10G004680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022921883.1 putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata]2.4e-2979.17Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAG
        MASI ++ ++  LL+ SVI+S++RVAR DLGLDLGG+GVGIGTG+GLGLGGSGSGSGSGSGSGSGSG  SSS+SSS+SSSS SGS AGSEAGSYAGS AG
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAG

Query:  SGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG
        SGSG NRNG    GSGSGSGYG GSGRGSG+GGGEGYGEGHGYG
Subjt:  SGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG

XP_022921884.1 glycine-rich cell wall structural protein 2-like [Cucurbita moschata]8.9e-48100Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSG
        MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSG
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSG

Query:  SGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN
        SGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN
Subjt:  SGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN

XP_023515818.1 putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo]7.6e-3175.93Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSG
        MASIRAVSILALLLALSVIVSESR+ARMDLGLDLGGVGVGIGTGVGLGLG        GSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGS 
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSG

Query:  SGRNRNGGSGS--------------------GSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG
        +G     G+GS                    GSGSGSGYG GSGRGSG+GGGEGYGEGHGYG
Subjt:  SGRNRNGGSGS--------------------GSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG

XP_023515819.1 putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo subsp. pepo]2.4e-2979.17Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAG
        MASI ++ ++  LL+ S IVS++RVAR DLGLDLGG+GVGIGTG+GLGLGGSGSGSGSGSGSGSGSG  SSS+SSS+SSSS SGS AGSEAGSYAGS AG
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAG

Query:  SGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG
        S SGRNRNG    GSGSGSGYG GSGRGSG+GGGEGYGEGHGYG
Subjt:  SGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG

XP_038879815.1 putative per-hexamer repeat protein 5 [Benincasa hispida]5.4e-3787.58Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----
        MASIRAV+ILA LL +SVIVSE RVARM+LGLDLGGVG+G+GTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY    
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----

Query:  AGSGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGE--GYGEGHGYGNDGEN
        AGSGSGRNRNG  GSGSGSGSGYGAGSGRGSG G GE  GYGEGHGYGN GEN
Subjt:  AGSGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGE--GYGEGHGYGNDGEN

TrEMBL top hitse value%identityAlignment
A0A1S3B8Y8 putative glycine-rich cell wall structural protein 17.2e-2774.17Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----
        MASIR V+++  LL +SVIVSESRVAR DLGLDLGG+G+G+GTGVGLGL       GSGSG GSG GSSSASSSHSSSSSSGSDAGSEAGSYAGSY    
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSY----

Query:  AGSGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN
        AGSGSGRNRNGGSGSGSG+G+G       G G G G GYGEGHGYGN GEN
Subjt:  AGSGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN

A0A6J1E1T0 glycine-rich cell wall structural protein 2-like4.3e-48100Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSG
        MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSG
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSG

Query:  SGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN
        SGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN
Subjt:  SGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN

A0A6J1E2L1 cell wall protein IFF6-like isoform X19.4e-2769.51Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSS--------------------
        MASI ++ ++  LL+ SVI+S++RVAR DLGLDLGG+GVGIGTG+GLGLGGSGSGSGSGSGSGSGSGSSS+SSS S SSS                    
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSS--------------------

Query:  --SGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG
          SGS AGSEAGSYAGS AGSGSG NRNG    GSGSGSGYG GSGRGSG+GGGEGYGEGHGYG
Subjt:  --SGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG

A0A6J1E521 putative glycine-rich cell wall structural protein 1 isoform X31.2e-2979.17Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAG
        MASI ++ ++  LL+ SVI+S++RVAR DLGLDLGG+GVGIGTG+GLGLGGSGSGSGSGSGSGSGSG  SSS+SSS+SSSS SGS AGSEAGSYAGS AG
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSG--SSSASSSHSSSSSSGSDAGSEAGSYAGSYAG

Query:  SGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG
        SGSG NRNG    GSGSGSGYG GSGRGSG+GGGEGYGEGHGYG
Subjt:  SGSGRNRNGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYG

A0A6J1JHN1 glycine-rich cell wall structural protein 2-like isoform X32.5e-2776.22Show/hide
Query:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGS-GSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGS
        MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGS GSGSGSGSGSGSGSGSSS+SSS+SSSSSSGS AGSEAGSYAGS AGS
Subjt:  MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGS-GSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGS

Query:  GSGRNRNGGSGSGSGS-----------------GSGYGAGSGRGSG----SGGGEGYGEGHGYG
        GSG      +GS +GS                 GSGYG GSGRG G     GGGEGYGEG GYG
Subjt:  GSGRNRNGGSGSGSGS-----------------GSGYGAGSGRGSG----SGGGEGYGEGHGYG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30450.1 glycine-rich protein2.6e-1365.09Show/hide
Query:  MASIRAVSILALLLALS-VIVSESRVARMDLGLDLGGVGVGIGTGVGLGL-GGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGS--DAGSEAGSYAGSY
        MA    + +L L++  S V+++ESR+AR DLG+DLGG+G+G+G G+G+GL GGSGSG+G+GSGSGSGS SSS+SSS SSSSSSGS   AGS AGS+AGS 
Subjt:  MASIRAVSILALLLALS-VIVSESRVARMDLGLDLGGVGVGIGTGVGLGL-GGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGS--DAGSEAGSYAGSY

Query:  AGSGSG
        AGSGSG
Subjt:  AGSGSG

AT4G30460.1 glycine-rich protein8.9e-2267.14Show/hide
Query:  ILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSS---GSDAGSEAGSYAGSYAGSGSGRNR
        ++ L+LA SV+VSESRVAR DLGLDLGG+G GIG G+G+G GGSGSG+G+GSGSG G  SSS+SSS SSSSSS   G DAGSEAGSYAGS+AGSGSG   
Subjt:  ILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSS---GSDAGSEAGSYAGSYAGSGSGRNR

Query:  NGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDG
          G G GSG G G+G G G G G GGG G G G GYG  G
Subjt:  NGGSGSGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCAGGGCTGTTTCCATTCTCGCTTTGCTACTTGCTCTGTCCGTCATTGTATCAGAAAGCCGCGTCGCCAGGATGGATTTGGGCCTCGACCTCGGCGGAGT
TGGCGTCGGTATTGGCACCGGCGTGGGGTTGGGGTTAGGTGGCAGTGGCTCCGGATCTGGGTCTGGGTCTGGGTCTGGCTCCGGATCTGGGTCCAGTTCTGCTTCGTCAT
CGCACTCCTCAAGCTCCAGCTCTGGCTCTGACGCTGGGTCCGAAGCTGGTTCGTACGCCGGCTCTTACGCTGGGTCCGGATCGGGTAGAAACAGAAACGGGGGATCTGGA
TCTGGGTCGGGGTCGGGGTCTGGATATGGTGCGGGTTCTGGCAGGGGAAGCGGCTCTGGCGGCGGTGAAGGATATGGAGAAGGGCATGGTTATGGGAATGACGGCGAGAA
CTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATCAGGGCTGTTTCCATTCTCGCTTTGCTACTTGCTCTGTCCGTCATTGTATCAGAAAGCCGCGTCGCCAGGATGGATTTGGGCCTCGACCTCGGCGGAGT
TGGCGTCGGTATTGGCACCGGCGTGGGGTTGGGGTTAGGTGGCAGTGGCTCCGGATCTGGGTCTGGGTCTGGGTCTGGCTCCGGATCTGGGTCCAGTTCTGCTTCGTCAT
CGCACTCCTCAAGCTCCAGCTCTGGCTCTGACGCTGGGTCCGAAGCTGGTTCGTACGCCGGCTCTTACGCTGGGTCCGGATCGGGTAGAAACAGAAACGGGGGATCTGGA
TCTGGGTCGGGGTCGGGGTCTGGATATGGTGCGGGTTCTGGCAGGGGAAGCGGCTCTGGCGGCGGTGAAGGATATGGAGAAGGGCATGGTTATGGGAATGACGGCGAGAA
CTGA
Protein sequenceShow/hide protein sequence
MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGSGSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSG
SGSGSGSGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN