; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh10G004810 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh10G004810
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L35
Genome locationCmo_Chr10:2147890..2150240
RNA-Seq ExpressionCmoCh10G004810
SyntenyCmoCh10G004810
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001706 - Ribosomal protein L35, non-mitochondrial
IPR018265 - Ribosomal protein L35, conserved site
IPR021137 - Ribosomal protein L35
IPR037229 - Ribosomal protein L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589755.1 50S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.5e-7198.01Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
        MASASATASFGL F PLCSRSSV VSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

KAG7023426.1 50S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]7.0e-7298.68Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
        MASASATASFGLRF PLCSRSSV VSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_022922051.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita moschata]7.4e-74100Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
        MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_022988597.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima]1.9e-6995.36Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
        MASASA+ SFGLRF PLCSRSSV VSR SVRLPSSNKAYSLRLSSSHN+S FGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_023516182.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita pepo subsp. pepo]8.5e-7096.69Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
        MASASATASFGLRF PLCSRSSV VSRSSVRLPSSNKAYSLRLSSSHNISRFGVAL+QKP HIAPSSRI TPFTVVAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

TrEMBL top hitse value%identityAlignment
A0A1S3B9R8 50S ribosomal protein L351.8e-5781.46Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
        MASAS   SFGLRF PLCSR S  VS +SV L S NK  SL+LSSSHNIS FG+  LQKP HI+P+S+IHTPFTV AAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKN KR+LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1C550 50S ribosomal protein L357.8e-6187.5Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSS-NKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS T SFGLRF PLCSR SV VS  SVRL SS NK  SLRL SS NIS FGVALLQK FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSS-NKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1E327 50S ribosomal protein L353.6e-74100Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
        MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1EZN8 50S ribosomal protein L352.3e-5784.11Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
        MASAS  A FGLRF PLCSR S  VS SS+RL S NKA SLRLSSSHNIS  GVALLQK   IAP  ++ TP TVVAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1JDG6 50S ribosomal protein L359.2e-7095.36Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
        MASASA+ SFGLRF PLCSRSSV VSR SVRLPSSNKAYSLRLSSSHN+S FGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  IVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

SwissProt top hitse value%identityAlignment
B2J0D1 50S ribosomal protein L355.1e-0957.14Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

P23326 50S ribosomal protein L35, chloroplastic3.6e-3159.62Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAY--SLRLSSSHNISRFGV---ALLQKPFHIAPS--SRIHTPFTVVAAKGYKMKTHKASAKRF
        MASA+AT SF      L   S+   +   + L   NK    +L LSSS +IS   V    L  K      S  S     FTV AAKGYKMKTHKASAKRF
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAY--SLRLSSSHNISRFGV---ALLQKPFHIAPS--SRIHTPFTVVAAKGYKMKTHKASAKRF

Query:  RVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ
        RVTG+GKIVRRRAGKQHLL KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Subjt:  RVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ

Q3M7I2 50S ribosomal protein L354.6e-1058.73Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

Q8VZ55 50S ribosomal protein L35, chloroplastic3.0e-3362.25Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRG
        ++ AS   SF    +PL S S     RSSV   +S       LSSSH+IS     L  K   +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRG
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        KIVRRR+GKQHLL KKN KRKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA

Q8YRL9 50S ribosomal protein L354.6e-1058.73Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

Arabidopsis top hitse value%identityAlignment
AT2G24090.1 Ribosomal protein L352.1e-3462.25Show/hide
Query:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRG
        ++ AS   SF    +PL S S     RSSV   +S       LSSSH+IS     L  K   +A P+S+    FTV A KGYKMKTHKASAKRFRVTGRG
Subjt:  MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIA-PSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        KIVRRR+GKQHLL KKN KRKLRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTGCTTCGGCGACGGCGTCCTTTGGTCTTAGGTTTTACCCACTGTGCTCTCGCTCATCAGTTGGCGTCTCTCGTAGTTCCGTCCGGCTCCCGTCGTCGAACAA
GGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCCAGTTCTCGAATTCATACTCCCTTCA
CTGTCGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCAT
TTGCTGTACAAGAAGAACACAAAGAGGAAACTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTGCCGTACCTGAAGGTGAA
TAGGCAGGCCAAGTAG
mRNA sequenceShow/hide mRNA sequence
CAAAATTAAGAAATGATAAATGAAATAAAAGCTATTCACTTTATCCGCACGGCAGGCCGAGTTTGAGGCTCGTATAGATTGGCAAGAAGGAGAAAGACGAGACGCTTCCA
AGCTTCAGGAGCCATGGCATCTGCTTCGGCGACGGCGTCCTTTGGTCTTAGGTTTTACCCACTGTGCTCTCGCTCATCAGTTGGCGTCTCTCGTAGTTCCGTCCGGCTCC
CGTCGTCGAACAAGGCGTACTCGTTGAGGCTTAGTTCCTCCCACAACATTTCCAGGTTTGGAGTCGCTTTACTTCAGAAGCCATTTCACATTGCTCCCAGTTCTCGAATT
CATACTCCCTTCACTGTCGTCGCTGCCAAAGGGTACAAAATGAAAACCCACAAGGCTTCAGCAAAGCGATTCAGAGTAACGGGTCGAGGGAAAATCGTTCGGAGGAGAGC
TGGAAAGCAGCATTTGCTGTACAAGAAGAACACAAAGAGGAAACTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTACGATAATGTGATTGGTGCTTTGCCGT
ACCTGAAGGTGAATAGGCAGGCCAAGTAGAGGTCATCACCCCGCCCCACTACACCTGCCTCTACTCACTTCATGTGTAATCAAACGATTTTCAACTTTCCAGAACTCATC
AAATGGAAAAATTCGATTGCTTAAAGATCTTATCTCTAATTTATTTCATCAGTTGATAATGGTACGCGTTCTTTTAATTCCCTTCCTCTCTTTCTTTTTGCTAACTTGAT
AGGCTACAAAGATGGAGCTTTATTTCTTCTATAAATTATGAGGATCTGGGATGTCTGCCCTGTTTGCTCTGTTTCATCTCATAAACAAAGTAATCATATCTAATTTCTAC
TTATACAATAAACAAATTTGATTTCTTCTTTGATTTACTTCCTCAAAGAAGAATCAAAATCATCACTCCAAGAGAACAGGTG
Protein sequenceShow/hide protein sequence
MASASATASFGLRFYPLCSRSSVGVSRSSVRLPSSNKAYSLRLSSSHNISRFGVALLQKPFHIAPSSRIHTPFTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQH
LLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK